Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgccttcatttctttgaactgtatacaccattgaatcaaagtttggttcttatacatttttctctctgcttcttattttgaaaaaaagACTTGTCCCAAAACTGCAACACATGAAGAAATGAGAGCTCATAGCACATTTGGATTGGAATGGTCAGAGCCCTTGGTCACATTCGCTCTCGCCTGTGGAA

Basic information

species Arabidopsis thaliana
transcript AT4G37080.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G37080.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA01G39120.1 (Glycine max), 3'ss of exon 9
-----------------------gtaagtgccttcatttctttgaactgtatacaccattgaatcaaagtttggtt----cttata-----catttttctctctgcttcttatttt------gaaaaaaagACTTGTCCCAAAACTGCAACACATGAAGAAATGAGAGCTCATAGCACATTTGGATTGGAATGGTCAGAGCCCTTGGTCACATTCGCTCTCGCCTGTGGAA
                       |    ||| ||||  | | | ||  || |     |||   | ||      ||     ||| ||     || ||    |  || || | || ||           | |||| || || ||| |||||| ||| |  || |||| |   |  |||| |||||| ||||||||||||||||||||||| ||||| || ||  |||||||||
gtaagtgcataatctactctcttgcctatgctttcagatgtctaaaaagtttttctaattttctaaagtccctgtcatgccttgtagattacaattcatcccttgattttcatctttccttactgcgacagACCTGCCCAAAAGCTGCAAAACACGGCGAGATGAAATTGCGAAGCATATTTGGCTTGGAATGGTCAGAGCCCTTGGTTACATTTGCACTTTCCTGTGGAA

upper sequence: AT4G37080.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA11G06130.1 (Glycine max), 3'ss of exon 7
--------------------------------------------gtaagtgccttcatttctttgaa---ctgtatacaccat-tgaatcaaagtttggttcttatacatttttctctctgcttcttattttgaaaaaaagACTTGTCCCAAAACTGCAACACATGAAGAAATGAGAGCTCATAGCACATTTGGATTGGAATGGTCAGAGCCCTTGGTCACATTCGCTCTCGCCTGTGGAA
                                              ||||   |  |||| |  |||   ||    |  |  | |  || | | ||    ||||    |||||  ||| |||||| |          | |||| || || ||| |||||| |||||| || |||| |   |  |||| |||||| ||||||||||||||||||||||| ||||| || ||  |||||||||
gtaagtgcataatctactctcctgcctatgctttcagaggtgtaaaaagtttttctatttttcagaagtccttgtcatgctttgtagattacaattcatctcttg---attttcatctttgcttcctgc-------gacagACCTGCCCAAAAGCTGCAAAACATGACGAGATGAAATTGCGAAGCATATTTGGCTTGGAATGGTCAGAGCCCTTGGTTACATTTGCACTTTCCTGTGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124931560|gb|EL008906.1|EL008906
EST:     ATCACAATCGAACATTTCATCTTGTAGACTTCCATACCACTTGAAATTC                         ACTTGTCCCAAAACTGCAACACATGAAGAAATGAGAGCTCATAG
genomic: ATCACAATCGAACATTTCATCTTG-AGACTTCCATACCACTTGAAATTCgtaagtgcct ... tgaaaaaaagACTTGTCCCAAAACTGCAACACATGAAGAAATGAGAGCTCATAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaaagtttggttcttatacatttttctctctgcttcttattttgaaaaaaagACTTGTCCCAAAACTGCAACACATGAAGAAATGAGAGCTCATAGCACATTTGGATTGGAATGGTCAGAGCCCTTGGTCACATTCGCTCTCGCCTGTGGAA
                   tacatttttctctctg  CT-rich tract
                                    ttcttattttgaaaaa  TA-rich tract