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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaataacggaaaacatctcgatgctactcatatattttcgcacattccaacagtttcttcttattcgtaatttgcagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAAC

Basic information

species Arabidopsis thaliana
transcript AT4G36195.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36195.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA16G24270.1 (Glycine max), 3'ss of exon 10
-----------gtatgtaataacg--gaaaacatctcgatgctac---tcatatattttcgcacattcca-acagtttcttcttattcgta-atttgcagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAAC
            |||||  | ||   |||   |     || | |    || |  ||||   |  ||| ||  ||   | || |  |  ||| ||   |||   | || ||  | ||  ||||||| ||||||||||| ||||||||||| |||||||| || ||||||||||| |
tattttgcattctatgtttttactctgaatgtactattatacgaagcgtcttgaatttgacctgatttcatgcatccttttgtgttatgtacatggacagGTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATC

upper sequence: AT4G36195.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA16G24290.1 (Glycine max), 3'ss of exon 9
-------------------------------------------------------------------gtatgtaataacgga--aaacatctcgatgctact-catatattttcgcacattccaacagtttcttcttattcgtaatttgcagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAAC
                                                                    |||   || | ||    |   | |  || ||| | | |  || |   |  ||| ||    |    |  |  |    ||   |||   | || || || || |||||||| ||||| ||||| ||||| ||||||||||| || || |||||||||||  
gtctagaaacttgcctatcctgaatttttatcccctgcccccaactcccttcattttaataatatttttatagcattatggttttactctgtacatactatttcttgaatatgacctgatttcatgtatcctattctgatgaacatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCATCCAAGCAAACTTCATCTCCTGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctactcatatattttcgcacattccaacagtttcttcttattcgtaatttgcagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAAC
                               tttcttcttattcgt  CT-rich tract
     tcatatatttt  TA-rich tract