Sequence
atgc intronic sequence ATGC exonic sequencegtatgtaataacggaaaacatctcgatgctactcatatattttcgcacattccaacagtttcttcttattcgtaatttgcagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAAC
Basic information
species | Arabidopsis thaliana |
transcript | AT4G36195.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G36195.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA16G24270.1 (Glycine max), 3'ss of exon 10
-----------gtatgtaataacg--gaaaacatctcgatgctac---tcatatattttcgcacattcca-acagtttcttcttattcgta-atttgcagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAAC
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tattttgcattctatgtttttactctgaatgtactattatacgaagcgtcttgaatttgacctgatttcatgcatccttttgtgttatgtacatggacagGTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATC
upper sequence: AT4G36195.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA16G24290.1 (Glycine max), 3'ss of exon 9
-------------------------------------------------------------------gtatgtaataacgga--aaacatctcgatgctact-catatattttcgcacattccaacagtttcttcttattcgtaatttgcagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAAC
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gtctagaaacttgcctatcctgaatttttatcccctgcccccaactcccttcattttaataatatttttatagcattatggttttactctgtacatactatttcttgaatatgacctgatttcatgtatcctattctgatgaacatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCATCCAAGCAAACTTCATCTCCTGATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86079905|gb|DR375662.1|DR375662EST: CCCTGAAGTCGATGCAACAAACCTGTATTATGGAAGTGACAGAATTGCTG CGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCAT
genomic: CCCTGAAGTCGATGCAACAAACCTGTATTATGGAAGTGACAGAATTGCTGgtatgtaata ... taatttgcagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gctactcatatattttcgcacattccaacagtttcttcttattcgtaatttgcagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAGACCTCATCTCCTGAAC
tttcttcttattcgt CT-rich tract
tcatatatttt TA-rich tract