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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatatcggaaaacttctcgacgatccttttagacttgtgcacattccaacagtttcttcgcatcttcttattctcaattttgtagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAAACCTCATCTCCTGACC

Basic information

species Arabidopsis thaliana
transcript AT4G36190.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G36190.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA16G24270.1 (Glycine max), 3'ss of exon 10
------gtatgtaatatcggaaaacttctcg-acgatccttttagacttgtgcacattccaacagtttcttcgcatcttcttattctcaat---tttgtagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAAACCTCATCTCCTGACC
      | ||   || |    |  ||    | || ||  |   |  | | |  | |||  | | | ||    ||||| | || |  |   |   |    ||   | || ||  | ||  ||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| |
tattttgcattctatgtttttactctgaatgtactattatacgaagcgtcttga-atttgacctgatttcatgcatccttttgtgttatgtacatggacagGTTCGAAAATAGTATTTGCAAATGGCTCACAGGATCCTTGGCGTCATGCGTCCAAACAAACTTCATCTCCTGATC

upper sequence: AT4G36190.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA16G24290.1 (Glycine max), 3'ss of exon 9
-------------------------------------------------------------gtatgtaatatcggaaaacttctcgacgatccttttagacttgtgcacattccaacagtttcttcgcatcttcttattctcaattttg-tagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAAACCTCATCTCCTGACC
                                                              ||| |  ||| | |  |    |  ||  |     ||   ||      ||   | | | ||    | ||| | || |  | ||  | |  ||   | || || || || |||||||| ||||| ||||| ||||| ||||||||||| ||||| |||||||||||  
gtctagaaacttgcctatcctgaatttttatcccctgcccccaactcccttcattttaataatatttt-tatagcattatggttttactctgtacatactatttcttgaatatgacctgatttcatgtatcctattctgatgaacatggacagGTTCAAAAATAATATTTACAAATGGCTCACAAGATCCTTGGCGCCATGCATCCAAGCAAACTTCATCTCCTGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agacttgtgcacattccaacagtttcttcgcatcttcttattctcaattttgtagCGACCAAGATTATCTTCACAAATGGGTCACAGGATCCATGGCGTCATGCATCCAAACAAACCTCATCTCCTGACC
                                tcttcttattctca  CT-rich tract
                                     ttattctcaatttt  TA-rich tract