1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtactgaataaaacattctctaaaccgatttcaactctgtttgttcaacattgatgaatttgcgtttttctttgtgatgcagTGGACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATGAGAGAGAGGCAAATCCTTACTACTCGACGGCGAGACTTTGGGATGATG
species | Arabidopsis thaliana |
transcript | AT4G34030.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGTTTTAACTCAGATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAG TGGACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATEST: gi|164113470|gb|ES063722.1|ES063722
genomic: GTGTTTTAACTCAGATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAGgtactgaata ... tgtgatgcagTGGACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTAT
EST: GTGTTTTAACTCAGATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAG TGGACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATEST: gi|125266049|gb|EL280134.1|EL280134
genomic: GTGTTTTAACTCAGATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAGgtactgaata ... tgtgatgcagTGGACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTAT
EST: AAAGGGCTACCAAGAAGAGACAAGGAATCAAG TGGACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATEST: gi|86060427|gb|DR356184.1|DR356184
genomic: AAAGGGCTACCAAGAAGAGACAAGGAATCAAGgtactgaata ... tgtgatgcagTGGACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTAT
EST: GATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAA TGGACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTAT
genomic: GATTGAAAGGGCTACCAAGAAGAGACAAGGAATCAAGgtactgaata ... tgtgatgcagTGGACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTAT
atttcaactctgtttgttcaacattgatgaatttgcgtttttctttgtgatgcagTGGACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATGAGAGAGAGGCAAATCCTTACTACTCGACGGCGAGACTTTGGGATGATG
cattgat putative branch site (score: 4)
tttgcgtttttcttt putative PPT
tttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgaataaaacattctctaaaccgatttcaactctgtttgttcaacattgatgaatttgcgtttttctttgtgatgcagTGGACTGAGGAAGAGGAAGAAGCGTTCAAGAAGAAAACGGTGGATGCGTATGAGAGAGAGGCAAATCCTTACTACTCGACGGCGAGACTTTGGGATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG