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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacgaacccttctcttataacagaaatttggatactcttttgggaatctctgatcataagaatctaaccattggcagGACCTTTTCACTGGAGGCTTCTCATTTGCCCCTCAGCAAGTTCATGGTCAACATCATGGCATGGGATATGGCATGCAATATTATCAATATCCTGTG

Basic information

species Arabidopsis thaliana
transcript AT4G32630.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116405915|gb|EG448507.1|EG448507
EST:     ATCATCAAGATGATGAGACACAATCTAGCATAAGAAAGGCGCTTCCTGAG                         GACCTTTTCACTGGAGGCTTCTCATTTGCCCCTCAGCAAGTTCATGGTCAA
genomic: ATCATCAAGATGATGAGACACAATCTAGCATAAGAAAGGCGCTTCCTGAGgtaacgaacc ... ccattggcagGACCTTTTCACTGGAGGCTTCTCATTTGCCCCTCAGCAAGTTCATGGTCAA
EST: gi|116405913|gb|EG448505.1|EG448505
EST:     ATCATCAAGATGATGAGACACAATCTAGCATAAGAAAGGCGCTTCCTGAG                         GACCTTTTCACTGGAGGCTTCTCATTTGCCCCTCAGCAAGTTCATGGTCAA
genomic: ATCATCAAGATGATGAGACACAATCTAGCATAAGAAAGGCGCTTCCTGAGgtaacgaacc ... ccattggcagGACCTTTTCACTGGAGGCTTCTCATTTGCCCCTCAGCAAGTTCATGGTCAA
EST: gi|116405920|gb|EG448512.1|EG448512
EST:     ATCATCAAGATGATGAGACACAATCTAGCATAAGAAAGGCGCTTCCTGAG                         GACCTTTTCACCGGAG-CTTCTCATTTGCCCCTCAGCAAGTTCATGGTCAA
genomic: ATCATCAAGATGATGAGACACAATCTAGCATAAGAAAGGCGCTTCCTGAGgtaacgaacc ... ccattggcagGACCTTTTCACTGGAGGCTTCTCATTTGCCCCTCAGCAAGTTCATGGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatttggatactcttttgggaatctctgatcataagaatctaaccattggcagGACCTTTTCACTGGAGGCTTCTCATTTGCCCCTCAGCAAGTTCATGGTCAACATCATGGCATGGGATATGGCATGCAATATTATCAATATCCTGTG
                                       atctaac  putative branch site (score: 2)
                                 ataagaat  TA-rich tract