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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaaatttatttcccatctcaccgggtcccagtcagaaccacgttttttgttaacagtaacctgtggttttgcagTCTGCCATACTCGGCATGCACTCGATTGTGTCACGTCCAATGGTAGTAGGAGGAAGCGTAGTGCCTAGACCAATGATGTATGTCGCACTTACGTATGATC

Basic information

species Arabidopsis thaliana
transcript AT4G26910.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083047|gb|DR378806.1|DR378806
EST:     GCGGTGTCTATGGAAGTCTCATAAGCACTCCGATCATTAATCCTCCTCAG                         TCTGCCATACTCGGCATGCACTCGATTGTGTCACGTCCAATGGTAGTAGGA
genomic: GCGGTGTCTATGGAAGTCTCATAAGCACTCCGATCATTAATCCTCCTCAGgtttaaattt ... ggttttgcagTCTGCCATACTCGGCATGCACTCGATTGTGTCACGTCCAATGGTAGTAGGA
EST: gi|47828366|gb|CK118050.1|CK118050
EST:     GCGGTGTCTATGGAAGTCTCATAAGCACTCCGATCATTAATCCTCCTCAG                         TCTGCCATACTCGGCATGCATTCGATTGTGTCACG
genomic: GCGGTGTCTATGGAAGTCTCATAAGCACTCCGATCATTAATCCTCCTCAGgtttaaattt ... ggttttgcagTCTGCCATACTCGGCATGCACTCGATTGTGTCACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accgggtcccagtcagaaccacgttttttgttaacagtaacctgtggttttgcagTCTGCCATACTCGGCATGCACTCGATTGTGTCACGTCCAATGGTAGTAGGAGGAAGCGTAGTGCCTAGACCAATGATGTATGTCGCACTTACGTATGATC
                                  cagtaac  putative branch site (score: 2)
                       ttttttgttaa  TA-rich tract