Sequence
atgc intronic sequence ATGC exonic sequencegtaggattattaaagctcatttaaatggctgaccaaattctcctatcacgtctcatttctgttgtctgagtttttttcttatatttatcagGTTGTAGAACATGGTCTTGGACATCTGCCTTTTACTGAAAAGCAAGTGATTACTCCAACCG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G26510.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G26510.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA18G08180.1 (Glycine max), 3'ss of exon 9
gtaggattattaaagctcatttaaatggctga-ccaaattctcctatcacgtctcatttctgttgt--ctgagtttttttcttatattt-atcagGTTGTAGAACATGGTCTTGGACATCTGCCTTTTACTGAAAAGCAAGTGATTACTCCAACCG-
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--tgagtaaacaggtttcttttttgtttctaaacttggttctgacatggaagtttcttttaattataactgatcataatatctgcacttgaccaggTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCTACTGG
upper sequence: AT4G26510.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA08G45270.1 (Glycine max), 3'ss of exon 9
gtaggattattaaagctcatttaaatggctgaccaaattc--tcctatcacgt---ctcatttctgttgt--ctgagtttttttcttatattt-atcagGTTGTAGAACATGGTCTTGGACATCTGCCTTTTACTGAAAAGCAAGTGATTACTCCAACCG
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gtaag--taaacaggtttatttttttttgtttctaaacttggtgccagcatgcaagtttcttttaattattactgatcataattgctgcacttgaccagGTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTG
upper sequence: AT4G26510.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA02G47270.1 (Glycine max), 3'ss of exon 9
gtaggattattaaagctcatttaaatggctgacca--aattctcctatcacgtctcatttctgttgtctgagttt---ttttcttatatttatcagGTTGTAGAACATGGTCTTGGACATCTGCCTTTTACTGAAAAGCAAGTGATTACTCCAACCG
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gtatg-taaatggggttcatttgttgctcttaatattagtgatggcgtggcatttt-cttcaatcattaatggtcaaatttcgctcacttgaccagGTTGTAGAACATGGCCTAGGGCATCTTCCATTTACAGAAAAGCAAGTAACCACTCCAACTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164188773|gb|ES024378.1|ES024378EST: CAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTG GTTGTAGAACATGGTCTTGGACATCTGCCTTTTACTGAAAAGCAAGTGATT
genomic: CAACCAAACATGATTTTGTCTTCTATTCTGATCGATTGATTAGGCTGgtaggattat ... tatttatcagGTTGTAGAACATGGTCTTGGACATCTGCCTTTTACTGAAAAGCAAGTGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attctcctatcacgtctcatttctgttgtctgagtttttttcttatatttatcagGTTGTAGAACATGGTCTTGGACATCTGCCTTTTACTGAAAAGCAAGTGATTACTCCAACCG
tttttttcttatattt CT-rich tract
tgagtttttttcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaggattattaaagctcatttaaatggctgaccaaattctcctatcacgtctcatttctgttgtctgagtttttttcttatatttatcagGTTGTAGAACATGGTCTTGGACATCTGCCTTTTACTGAAAAGCAAGTGATTACTCCAACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG