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gtaatcacattttcttaaacatgattaagtgatttgttgtttctcctaatagcatctctaaactgctatatatatatatgaattttattacagCAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAA
species | Arabidopsis thaliana |
transcript | AT4G26260.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAA CAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGTEST: gi|116471598|gb|EG514190.1|EG514190
genomic: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAAgtaatcacat ... tttattacagCAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGT
EST: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAA CAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGTEST: gi|116471597|gb|EG514189.1|EG514189
genomic: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAAgtaatcacat ... tttattacagCAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGT
EST: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAA CAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGT
genomic: CTTATGAACGAGGAAGACAAGGAGAATCTGAAGTGGCTACACGTTTTCAAgtaatcacat ... tttattacagCAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGT
gtttctcctaatagcatctctaaactgctatatatatatatgaattttattacagCAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAA
ttttatt CT-rich tract
tctaaactgctatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcacattttcttaaacatgattaagtgatttgttgtttctcctaatagcatctctaaactgctatatatatatatgaattttattacagCAAGTACGACTTGTACAGTAAGAGCAAAGTTCACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA