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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttaaaatatggaaaaaagttcacaggttgtctcttaataagtcatctttaaaactattttttcccttaccttaatcttgcatgcactatagGGTATTGATGTTTTGAATGGCATAGCATGGGACAGTGACAAGCAACGCCTCTTTGGTAATAAATCTTGTTATCATCCCCTCTAGGCTTGATTACTCGACG

Basic information

species Arabidopsis thaliana
transcript AT4G25720.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25720.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv16s0050g01140.t01 (Vitis vinifera), 3'ss of exon 9
gtgagttaaaatatggaaaaaagttcacaggttgtctcttaataagtcatc------tttaaaactattttttcccttaccttaatcttgca-tgcactatagGGTATTGATGTTTTGAATGGCATAGCATGGGACAGTGACAAGCAACGCCTCTTTGGTAATAAATCTTGTTATCATCCCCTCTAGGCTTGATTACTCGACG
 |   ||    | |    | |   ||||    ||   || || || ||||       ||       | || ||| || ||       || || ||   |  |||  ||||||||||||||||||||||||||||| ||||| ||  | ||||| ||||                                             
-tctctttctctctctccacagaatcac--tctgatactaaagaattcattgtttctttctccttcacttattcactcacacaggaatttcactgtcttccagGACATTGATGTTTTGAATGGCATAGCATGGGATAGTGAGAAAAACCGCCTTTTTG---------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164189532|gb|ES103613.1|ES103613
EST:     TCGGGGATTGCTGAAATCTGGACATAGG                         GGTATTGATGTTTTGAATGGCATAGCATGG
genomic: TCGGGGATTGCTGAAATCTGGACATAGGgtgagttaaa ... tgcactatagGGTATTGATGTTTTGAATGGCATAGCATGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagtcatctttaaaactattttttcccttaccttaatcttgcatgcactatagGGTATTGATGTTTTGAATGGCATAGCATGGGACAGTGACAAGCAACGCCTCTTTGGTAATAAATCTTGTTATCATCCCCTCTAGGCTTGATTACTCGACG
     tcatctttaaaactat  TA-rich tract