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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatcttgctctcgcttctatttctttttctttctatttttaaataagttggaatgattttgttcatttcgttttaaaaatttgccagGTACTGGAGACTATATTACAAGATAACTTCGTCCCAAATGACACAATTTTGCATGCAGAAGGGGAATATTGCCAAATTATCACCGGACCTAACATGGGAG

Basic information

species Arabidopsis thaliana
transcript AT4G25540.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25540.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv16s0100g01310.t01 (Vitis vinifera), 3'ss of exon 9
gtatgcatcttgctctcgcttctatttctttttct---ttctatttttaaataagttggaatgat-tttgttcatttcgttt-taaaaatttg---ccagGTACTGGAGACTATATTACAAGATAACTTCGTCCCAAATGACACAATTTTGCATGCAGAAGGGGAATATTGCCAAATTATCACCGGACCTAACATGGGAG
   ||   |  | ||||  || |   ||| ||       |  |||||||  |   ||||     | ||| |||| | | |    ||  ||||    ||||||  |||||||  |||||||||| || || |||||||||||||||| |||||||||||| || || || ||  | ||| | || ||||| |||||||| |
tgctgttccaagttctcaattattgatctattgtgaaactacatttttatttgttttgggggactatttcttcactgcttacacaattatttataaccagGTTTTGGAGACAGTATTACAAGACAATTTTGTCCCAAATGACACAAATTTGCATGCAGACGGAGAGTACTGTGAGATTGTTACTGGACCAAACATGGGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatttttaaataagttggaatgattttgttcatttcgttttaaaaatttgccagGTACTGGAGACTATATTACAAGATAACTTCGTCCCAAATGACACAATTTTGCATGCAGAAGGGGAATATTGCCAAATTATCACCGGACCTAACATGGGAG
                       attttgttcatttcgt  TA-rich tract