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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcgtttcttctaacaaccatttaacattttagattccacaatcataccaaacacgaatcattcttgtatttgtttactcgtgttacagGAAGCTATGATGAAAGATACATTAGAAACCGCAAGAGAACCAAACCTGAACCTTAAAGGCTACTTGCAAAATGCTTACGTTCATCCGGTTTTCAAAGGCG

Basic information

species Arabidopsis thaliana
transcript AT4G22120.5
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G22120.5 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA13G10490.1 (Glycine max), 3'ss of exon 11
------gtttgtcgtttcttctaacaaccatttaacattttagattccacaatcataccaaacacgaatc-attcttgtatttgtttactcgtgttacagGAAGCTATGATGAAAGATACATTAGAAACCGCAAGAGAACCAAACCTGAACCTTAAAGGCTACTTGCAAAATGCTTACGTTCATCCGGTTTTCAAAGGCG
        |       | |  |   || || ||   | ||   || | |   || |     |    | |    | |||| ||     |||  |  | |||||||| |||||||||||||||||||||    ||| |||||| ||||||||| | ||||| ||  | || ||||| ||||||||||| ||||| || | | 
gagcacactgtataagtatcttgtaaatcaatttggacttggtatacaagtttcctctttcatggaattttgatgttgtcttcccgaactatttatgcagGAAGCAATGATGAAAGATACATTAGAACGAACAACAGAACCTAACCTGAACTTGAAAGGTTATCTTCAGAATGCCTACGTTCATCCAGTTTTTAAGGACA

upper sequence: AT4G22120.5 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA20G16230.3 (Glycine max), 3'ss of exon 6
------gtttgtcgtttcttctaacaaccatttaacattttagattccacaatcataccaaacacgaatc-attcttgtatttgtttactcgtgttacagGAAGCTATGATGAAAGATACATTAGAAACCGCAAGAGAACCAAACCTGAACCTTAAAGGCTACTTGCAAAATGCTTACGTTCATCCGGTTTTCAAAGGCG
         ||     | |  |   || || ||   | ||   || | |   || |     |    | |    | |||  |||    |||  |  | |||||||| |||||||||||||||||||||   |||| |||||| ||||||||| | ||||| ||  | || ||||| || ||||| || ||||| || | | 
tgagcacaatgctaagtatcatgtaaatcaatttggacttggtatacaagtttcctttttcatggaattttgatgttgcctttccaaactgtttatgcagGAAGCAATGATGAAAGATACATTAGAACGGGCAACAGAACCTAACCTGAACTTGAAAGGTTATCTTCAGAATGCCTATGTTCACCCAGTTTTTAAGGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccacaatcataccaaacacgaatcattcttgtatttgtttactcgtgttacagGAAGCTATGATGAAAGATACATTAGAAACCGCAAGAGAACCAAACCTGAACCTTAAAGGCTACTTGCAAAATGCTTACGTTCATCCGGTTTTCAAAGGCG
                                       tttactc  CT-rich tract
                                 tatttgttta  TA-rich tract