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gtaacacaatttttatcctttttcaggtatcaactatcattgcaattggcaataagttatcttcttatcaatttatcatcttctaaccttagatcatatattcttgtaatctcagCCGACATATATATGCGTGGATGGTGATGGCACAGTCCCGATGGAATCTGCCATG
species | Arabidopsis thaliana |
transcript | AT4G19860.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTTCCAG CCGACATATATATEST: gi|86073385|gb|DR369142.1|DR369142
genomic: GGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTTCCAGgtaacacaat ... gtaatctcagCCGACATATATAT
EST: GGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTTCCAG CCGACATATATATGCGNNGATGGTGATGGCACAGTCCCGATGGAATCTGCCEST: gi|124966031|gb|EL040163.1|EL040163
genomic: GGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTTCCAGgtaacacaat ... gtaatctcagCCGACATATATATGCGTGGATGGTGATGGCACAGTCCCGATGGAATCTGCC
EST: GGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTTCCAG CCGACATATATAATGCGTGGATGGTGATGGCACAGTCCC
genomic: GGAATGAGAAGATGCCCGTTAAAGATCTAACGAATCTAAGATACTTCCAGgtaacacaat ... gtaatctcagCCGACATATATA-TGCGTGGATGGTGATGGCACAGTCCC
cttcttatcaatttatcatcttctaaccttagatcatatattcttgtaatctcagCCGACATATATATGCGTGGATGGTGATGGCACAGTCCCGATGGAATCTGCCATG
ttctaac putative branch site (score: 1)
ttcttgt putative PPT
atatattcttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacacaatttttatcctttttcaggtatcaactatcattgcaattggcaataagttatcttcttatcaatttatcatcttctaaccttagatcatatattcttgtaatctcagCCGACATATATATGCGTGGATGGTGATGGCACAGTCCCGATGGAATCTGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA