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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctggttgatatgcaaaccacatttaaccgcttttgaagtgtttggttcattgttgtttccccaatgtttccgacaattcaattcacgctattgtttagGTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTTCCTGTTGGCACAACTGCTTATATGGGCCGGGCAGCACATCTTTTGCAAT

Basic information

species Arabidopsis thaliana
transcript AT4G16760.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116448274|gb|EG490866.1|EG490866
EST:     ATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAG                         GTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTT
genomic: ATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAGgtatttgtca ... tattgtttagGTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTT
EST: gi|116441440|gb|EG484032.1|EG484032
EST:     ATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAG                         GTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTT
genomic: ATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAGgtatttgtca ... tattgtttagGTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTT
EST: gi|116448277|gb|EG490869.1|EG490869
EST:     ATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAG                         GTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTT
genomic: ATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAGgtatttgtca ... tattgtttagGTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTT
EST: gi|301501186|gb|HO206726.1|HO206726
EST:     ATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAG                         GTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTT
genomic: ATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAGgtatttgtca ... tattgtttagGTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTT
EST: gi|116479261|gb|EG521853.1|EG521853
EST:     ATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAG                         GTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTT
genomic: ATGTTCCTGCCTGCACATACGAAGGAGACAATGTTGTGCTGCAATTACAGgtatttgtca ... tattgtttagGTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttcattgttgtttccccaatgtttccgacaattcaattcacgctattgtttagGTTGCTCGATTCCTCATGAAGACAGTCGCCCAGCTGGGATCTGGAAAGGTTCCTGTTGGCACAACTGCTTATATGGGCCGGGCAGCACATCTTTTGCAAT
                               aattcaatt  TA-rich tract