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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtttctctgatagatttctgaatccttaatgaatttgagcatcaattacatcacagccggttactttcttgtgaatgattatctatttcctgcaacagCCGTATCAGAATGTTCCGCAGCCAGGCAAGTCAATGAACCCTTTTGACTTCAGCCCTGGGCCGCCATCACAAACACAAACG

Basic information

species Arabidopsis thaliana
transcript AT4G13350.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164221407|gb|ES119235.1|ES119235
EST:     GCAGCAGTATAATAACCCCGTG                         CCGTATCAGAATGTTCCGCAGCCAGGCAAGTCAATGAACCCTTTTGACTTC
genomic: GCAGCAGTATAATAACCCCGTGgtatggtttc ... cctgcaacagCCGTATCAGAATGTTCCGCAGCCAGGCAAGTCAATGAACCCTTTTGACTTC
EST: gi|116458993|gb|EG501585.1|EG501585
EST:     GTCCACCTCATGCTATGCACTATGGCATGCAGCAGTATAATAACCCCGTG                         CCGTATCAGAATGTTCCGCAGCCAGGCAAGTCAATGAACCCTTTTGACTTC
genomic: GTCCACCTCATGCTATGCACTATGGCATGCAGCAGTATAATAACCCCGTGgtatggtttc ... cctgcaacagCCGTATCAGAATGTTCCGCAGCCAGGCAAGTCAATGAACCCTTTTGACTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattacatcacagccggttactttcttgtgaatgattatctatttcctgcaacagCCGTATCAGAATGTTCCGCAGCCAGGCAAGTCAATGAACCCTTTTGACTTCAGCCCTGGGCCGCCATCACAAACACAAACG
                                      tctatttcct  CT-rich tract
                              aatgattatctattt  TA-rich tract