1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaaaccataaaaaccgaaacgaaatgtttccttaacaaagaatggtcatttctaaaacacgtctgtgtttattgtttgtttcttctcagGTTTATGGTGAGCCAAGGCTGTATCAAACCTCTATGCGATCTCCTTACTTGCCCAGATCTGAAAGTTGTAACGGTTTGCTTAGAAGCACTAGAGAACATT
species | Arabidopsis thaliana |
transcript | AT4G02150.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATATCAAATGCTACTTCTGGTGGCACTCATGATCAAATCAA GTTTATGGTGAGCCAAGGCTGTATCAAACCTCTATGCGATCTCCTTAEST: gi|124817522|gb|EH902388.1|EH902388
genomic: ATATCAAATGCTACTTCTGGTGGCACTCATGATCAAATCAAgtaaaaccat ... ttcttctcagGTTTATGGTGAGCCAAGGCTGTATCAAACCTCTATGCGATCTCCTTA
EST: CTACTTCTGGTGGCACTCATGATCAAATCAA GTTTATGGTGAGCCAAGGCTGTATCAAACCTCTATGCGATCTCCTT
genomic: CTACTTCTGGTGGCACTCATGATCAAATCAAgtaaaaccat ... ttcttctcagGTTTATGGTGAGCCAAGGCTGTATCAAACCTCTATGCGATCTCCTT
acaaagaatggtcatttctaaaacacgtctgtgtttattgtttgtttcttctcagGTTTATGGTGAGCCAAGGCTGTATCAAACCTCTATGCGATCTCCTTACTTGCCCAGATCTGAAAGTTGTAACGGTTTGCTTAGAAGCACTAGAGAACATT
ttctaaa putative branch site (score: 2)
ttgtttgtttcttctc putative PPT
tttattgtttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaccataaaaaccgaaacgaaatgtttccttaacaaagaatggtcatttctaaaacacgtctgtgtttattgtttgtttcttctcagGTTTATGGTGAGCCAAGGCTGTATCAAACCTCTATGCGATCTCCTTACTTGCCCAGATCTGAAAGTTGTAACGGTTTGCTTAGAAGCACTAGAGAACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC