1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaccttttcagaattatgttggaagaatcagtggtttggctctgttaatcagtgaatagtttctttcttggttcttcatggtgttgcgttactttggtttggcaatgcagCTCTCGTTTCATATGTGGACAGACCAGATGCAAGAGTCTTTGAACTCGAAGAAGAAGGGTGATGTGGCTTTCAGGCAAAAAGACTTTAGAGAGGCCATCG
species | Arabidopsis thaliana |
transcript | AT4G00710.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGATCCTGGAGAAACTTGGATACAAAGACGACGAGGGTGTCACCAATGAG CTCTCGTTTCATATGTGGACAGACCAGATGCAAGAGTCTTTGAACTCGAAGEST: gi|47831462|gb|CK121146.1|CK121146
genomic: AGATCCTGGAGAAACTTGGATACAAAGACGACGAGGGTGTCACCAATGAGgtaccttttc ... ggcaatgcagCTCTCGTTTCATATGTGGACAGACCAGATGCAAGAGTCTTTGAACTCGAAG
EST: AGATCCTGGAGAAACTTGGATACAAAGACGACGAGGGTGTCACCAATGAG CTCTCGTTTCATATGTGGACAGACCAGATGCAAGAGTCTTTGAACTCGAAGEST: gi|125104431|gb|EL158509.1|EL158509
genomic: AGATCCTGGAGAAACTTGGATACAAAGACGACGAGGGTGTCACCAATGAGgtaccttttc ... ggcaatgcagCTCTCGTTTCATATGTGGACAGACCAGATGCAAGAGTCTTTGAACTCGAAG
EST: GACGAGGGTGTCACCAATGAG CTCTCGTTTCATATGTGGACAGACCAGATGCAAGAGTCTTTGAACTCGAAG
genomic: GACGAGGGTGTCACCAATGAGgtaccttttc ... ggcaatgcagCTCTCGTTTCATATGTGGACAGACCAGATGCAAGAGTCTTTGAACTCGAAG
atagtttctttcttggttcttcatggtgttgcgttactttggtttggcaatgcagCTCTCGTTTCATATGTGGACAGACCAGATGCAAGAGTCTTTGAACTCGAAGAAGAAGGGTGATGTGGCTTTCAGGCAAAAAGACTTTAGAGAGGCCATCG
ttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccttttcagaattatgttggaagaatcagtggtttggctctgttaatcagtgaatagtttctttcttggttcttcatggtgttgcgttactttggtttggcaatgcagCTCTCGTTTCATATGTGGACAGACCAGATGCAAGAGTCTTTGAACTCGAAGAAGAAGGGTGATGTGGCTTTCAGGCAAAAAGACTTTAGAGAGGCCATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG