1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtactcatgtgttctgcttgattttcattttgcgttttttcactcacaacatttttgcctgccactgccaatcttttgtcttttcttctcttctgttatagccataggatttacgtattgccaatcttggggaggtcatgatacgtattgagaaagcactagatagtttgacgattctctctatcttttctctttcccagTGATTTGGAGCTTAAGCCACAGGGAAAGCTTATAGTAACAGTTGTGAAAGCAACTAACTTGAAGAATAAGGAATTGATTGGAAAATCTGACCCTTATGCT
species | Arabidopsis thaliana |
transcript | AT3G61050.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGTGGTATTCCTGTTGATTTAAG TGATTTGGAGCTTAAGCCACAGGGAAAGCTTATAGTAACAGTTGTGAAAGCEST: gi|125177001|gb|EL196302.1|EL196302
genomic: TGGTGGTATTCCTGTTGATTTAAGgtactcatgt ... tctttcccagTGATTTGGAGCTTAAGCCACAGGGAAAGCTTATAGTAACAGTTGTGAAAGC
EST: GGCCTCATAGAATTGTTGTTCCCATTGGTGGTATT-CTGTTGATTTAAG TGATTTGGAGCTTAAGCCACAGGGAAAGCTTATAGTAACAGTTGTGAAAGC
genomic: GGCCTCATAGAATTGTTGTTCCCATTGGTGGTATTCCTGTTGATTTAAGgtactcatgt ... tctttcccagTGATTTGGAGCTTAAGCCACAGGGAAAGCTTATAGTAACAGTTGTGAAAGC
tattgagaaagcactagatagtttgacgattctctctatcttttctctttcccagTGATTTGGAGCTTAAGCCACAGGGAAAGCTTATAGTAACAGTTGTGAAAGCAACTAACTTGAAGAATAAGGAATTGATTGGAAAATCTGACCCTTATGCT
gtttgac putative branch site (score: 4)
cgattctctctatctt CT-rich tract
tatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactcatgtgttctgcttgattttcattttgcgttttttcactcacaacatttttgcctgccactgccaatcttttgtcttttcttctcttctgttatagccataggatttacgtattgccaatcttggggaggtcatgatacgtattgagaaagcactagatagtttgacgattctctctatcttttctctttcccagTGATTTGGAGCTTAAGCCACAGGGAAAGCTTATAGTAACAGTTGTGAAAGCAACTAACTTGAAGAATAAGGAATTGATTGGAAAATCTGACCCTTATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA