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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctgacgacaatactttaccaccaaattccaaactagattttaaatacagggaagagatatcctcatatgatgtaaaacctcctcctcttaatatgacattttttgtctaattcatattatccttgacatttataatgtaacagGTTGCAGATGATCTTATTTTAGAGAAGACCTCATCACCAATAGGTGTTCTTCTGATTGTTTTTGAATCCCGGCCTGATGCACTTGTTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G55610.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86042495|gb|DR338250.1|DR338250
EST:     AGCTAGCCGAAATGGAAGATCCAATAGGCCGTGTATTAAAGAAAACTCAG                         GTTGCAGATGATCTTATTTTAGAGAAGACCTCATCACCAATAGGTGTTCTT
genomic: AGCTAGCCGAAATGGAAGATCCAATAGGCCGTGTATTAAAGAAAACTCAGgtaatctgac ... aatgtaacagGTTGCAGATGATCTTATTTTAGAGAAGACCTCATCACCAATAGGTGTTCTT
EST: gi|86042492|gb|DR338247.1|DR338247
EST:     AGCTAGCCGAAATGGAAGATCCAATAGGCCGTGTATTAAAGAAAACTCAG                         GTTGCAGATGATCTTATTTTAGAGAAGACCTCATCACCAATAGGTGTTCTT
genomic: AGCTAGCCGAAATGGAAGATCCAATAGGCCGTGTATTAAAGAAAACTCAGgtaatctgac ... aatgtaacagGTTGCAGATGATCTTATTTTAGAGAAGACCTCATCACCAATAGGTGTTCTT
EST: gi|86042493|gb|DR338248.1|DR338248
EST:     AGCTAGCCGAAATGG-AGATCCAATAGGCCGTGTATTAAAGAAAACTCAG                         GTTGCAGATGATCTTATTTTAGAGAAGACCTCATCACCAATAGGTGTTCTT
genomic: AGCTAGCCGAAATGGAAGATCCAATAGGCCGTGTATTAAAGAAAACTCAGgtaatctgac ... aatgtaacagGTTGCAGATGATCTTATTTTAGAGAAGACCTCATCACCAATAGGTGTTCTT
EST: gi|86064873|gb|DR360630.1|DR360630
EST:     AGCTAGCCGAAATGGAAGATCCAATAGGCCGTGTATTAAAGAAAACTCAG                         GTTGCAGATGATCTTATTTTTANAGAAGACCTCATCACCAATAGG
genomic: AGCTAGCCGAAATGGAAGATCCAATAGGCCGTGTATTAAAGAAAACTCAGgtaatctgac ... aatgtaacagGTTGCAGATGATCTTATTTT-AGAGAAGACCTCATCACCAATAGG
EST: gi|86042496|gb|DR338251.1|DR338251
EST:     AGCTAGCCGAAATGGAAGATCCAATAGGCCGTGTATTAAAGAAAACTCAG                         GTTGCAGATGATCTTATTTTAGAGAAGACCTCATCACCAATAGGTGTTCTT
genomic: AGCTAGCCGAAATGGAAGATCCAATAGGCCGTGTATTAAAGAAAACTCAGgtaatctgac ... aatgtaacagGTTGCAGATGATCTTATTTTAGAGAAGACCTCATCACCAATAGGTGTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatatgacattttttgtctaattcatattatccttgacatttataatgtaacagGTTGCAGATGATCTTATTTTAGAGAAGACCTCATCACCAATAGGTGTTCTTCTGATTGTTTTTGAATCCCGGCCTGATGCACTTGTTCAG
         attttttgtctaattc  TA-rich tract