1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tatcagtggaattttttattgtactcaatcaaagaagtgagatcattgttaaacgtcaaattcaaattcataatcatattcttttgattgaatgtgttagATGTGGACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAATGTAAAAACACTTGGGGAAGTTATGAATGCAGCTGCAGCAACGGTTTGCT
species | Arabidopsis thaliana |
transcript | AT3G52850.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGCAAATGCCCACTTGGGTTCAAGGGCGATGGAGTGAAGAACTGTGAAG ATGTGGACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAATEST: gi|86037686|gb|DR333441.1|DR333441
genomic: TTGCAAATGCCCACTTGGGTTCAAGGGCGATGGAGTGAAGAACTGTGAAGgtacttgcta ... aatgtgttagATGTGGACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAAT
EST: TTGCAAATGCCCACTTGGGTTCAAGGGCGATGGAGTGAAGAACTGTGAAG ATGTGGACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAATEST: gi|124956175|gb|EL031125.1|EL031125
genomic: TTGCAAATGCCCACTTGGGTTCAAGGGCGATGGAGTGAAGAACTGTGAAGgtacttgcta ... aatgtgttagATGTGGACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAAT
EST: CAAATGCCCACTTGGGTTCAAGGGCGATGGAGTGAAGAACTGTGAAG ATGTGGACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAAT
genomic: CAAATGCCCACTTGGGTTCAAGGGCGATGGAGTGAAGAACTGTGAAGgtacttgcta ... aatgtgttagATGTGGACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAAT
ttgttaaacgtcaaattcaaattcataatcatattcttttgattgaatgtgttagATGTGGACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAATGTAAAAACACTTGGGGAAGTTATGAATGCAGCTGCAGCAACGGTTTGCT
ttttgat putative branch site (score: 4)
aaattcaaattcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcagtggaattttttattgtactcaatcaaagaagtgagatcattgttaaacgtcaaattcaaattcataatcatattcttttgattgaatgtgttagATGTGGACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAATGTAAAAACACTTGGGGAAGTTATGAATGCAGCTGCAGCAACGGTTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caaattc