Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagacttccactttttttctattagagactatgcctgtaggctttaactcgcctaggcgtttgtaggatcagatttggtcagaatatcttgaattactgttctggtcttttgttttgctgatgtgtattctatctgcagGTGTGAACGGGTGCTCGTTGAAAACAGCTGAGAATCTTGAGGTAATGAAAGGAATACCAGTAGAGAGAATGATGATCGAAACCGACTCTCCATATTGTGA

Basic information

species Arabidopsis thaliana
transcript AT3G52390.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083780|gb|DR379539.1|DR379539
EST:     TAGTGCGTCGGACCGCGATAAGCTTCTCTCTTTCGATAAAATGTACCTTG                         GTGTGAACGGGTGCTCGTTGAAAACAGCTGAGAATCTTGAGGTAATGAAAG
genomic: TAGTGCGTCGGACCGCGATAAGCTTCTCTCTTTCGATAAAATGTACCTTGgtaaagactt ... ctatctgcagGTGTGAACGGGTGCTCGTTGAAAACAGCTGAGAATCTTGAGGTAATGAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatcttgaattactgttctggtcttttgttttgctgatgtgtattctatctgcagGTGTGAACGGGTGCTCGTTGAAAACAGCTGAGAATCTTGAGGTAATGAAAGGAATACCAGTAGAGAGAATGATGATCGAAACCGACTCTCCATATTGTGA
                               tgctgat  putative branch site (score: 3)
                                           ttctatct  putative PPT
                       ttttgtttt  TA-rich tract