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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcagcgttcaactttcacaatgcttcctatgtttgaaaaacctcagttccattgattagcatgagtgcgcaacagttacctggttccttgactcctgattattgtttccgggtgtatatggataaaagCTTACAGGACTCAAGAGGAAGACTGTTACTCTGACACTGAAAGATAAGGGGTTCTCCAGAGTAGAAATTTCTGGCCTTGACATTGGATGGGGACAG

Basic information

species Arabidopsis thaliana
transcript AT3G52180.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G52180.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv00s0250g00020.t01 (Vitis vinifera), 3'ss of exon 10
gtgagtcagcgttcaactttcacaatgcttcctatgtttgaaaaacctcagttccattgattagcatgagtgcgcaacagttacctggttccttgactcctgattattgtttccgggtgtatatggataaaagCTTACAGGACTCAAGAGGAAGACTGTTACTCTGACACTGAAAGATAAGGGGTTCTCCAGAGTAGAAATTTCTGGCCTTGACATTGGATGGGGACAG
                         |  |  | ||  |||       ||| || || |  |   ||||| |||  |    ||  ||| || ||    |  || ||  | ||        | |||   | |||||||||||  ||||| | | || |||||||| ||| |  ||| |||||  | | | ||| ||||||||||||||| ||||| ||||||||||| |||
------------------------cttttatccatacttgttccttttcaattacaatagt---catga-tgca-attctttttctgatttctccttttttgcttggt-ttattatccttttat---ttaaagCTTACAGACCTCAAAAAGCAGCCTGTTACTTTGAAATGGAAGGATAACAGTTGCACCACAGTAGAAATTTCTGGTCTTGATATTGGATGGGGCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttacctggttccttgactcctgattattgtttccgggtgtatatggataaaagCTTACAGGACTCAAGAGGAAGACTGTTACTCTGACACTGAAAGATAAGGGGTTCTCCAGAGTAGAAATTTCTGGCCTTGACATTGGATGGGGACAG
                   tcctgat  putative branch site (score: 3)
                        attattgttt  TA-rich tract