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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC

Basic information

species Arabidopsis thaliana
transcript AT3G51130.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA01G37380.1 (Glycine max), 3'ss of exon 9
gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgc---tttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
                                                     ||||  ||    ||  |   ||  | | ||    ||   | ||| |  ||  | |     || || | | ||       | | |   |||    | |  |||| ||||||||||||||||||||||| ||||||  ||| |||   |||||| ||||||||||||||||||| || ||||||||||||||| |||||||| 
---------------------------------------------------gtattaattttgtcta--aatatatattcatttaaggtctaaattctac-cttgaataagttttggtttgtttgaagtctgactcttaattgtaattctgtagGTTGATCAAATGGTTATTCATTCTGCTTCAGATTTTCGGCCACGGACAACTCTCTGTGGTGATTACTTTTATAATTATTTTACTCGTGGTCTGGACATCT

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA11G07910.1 (Glycine max), 3'ss of exon 9
gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
                                        | |    ||    |  | ||||   || ||| |||     || | ||| |  | |       |   ||    ||    |  ||||  ||| ||||||  ||     |  |||||||||||||||||||||||||||| ||||||| ||| |||   |||||| ||||||| || |||||||| || ||||||||||||||| |||||||  
---------------------------------------taccttgagcacaaagcaacttca--taatattttaagctagtaaactgcttgaat---gagttttgctatgtatg---aagtctgactcttaattgtaattc----tatagGTAGATCAAATGGTTATTCATTCTGCTTCAGATCTTCGGCCACGGACAACTCTCTGTGGAGACTACTTTTATAATTATTTTACTCGTGGTCTGGACATAT

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 3'ss of exon 9
gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
                 | |||||||     ||||| | | | |      |||| |  |||||     | | |||  |  |||| || ||   |     || | |  ||||     ||  || ||||| | |                ||||| || |||||||| ||||| ||||| ||||||||||| |||   |||||| |||||||||||||||| ||||| ||||||  ||||||||||||||| |
-----------------tttaaactt-----tatat-atgcttaa-----tccaatgtcttctgagtatttattatttatgttacctattgatg----gtattga--tggagg---gtgattttgcttgtaa--------------cacagGTTGACCAAATGGTAATTCACTCTGCCTCAGATCCTCGCCCACGGACAACTCTCTGTGGTGATTACTTCTACAATTATTTTGATCGTGGTTTGGACATAC

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: EFJ29519 (Selaginella moellendorffii), 3'ss of exon 8
gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
                                                                                            |  |    ||   |  |       | ||   | |     |||  |    || |   ||||| ||||  |||||||| || || || || |||||  | || ||  || |  | |||||||| |||||||||||||||||| ||||||| || |||||||
------------------------------------------------------------------------------------------gtaactatcgacatgagagagagagagaatcagt-cacaacaatcttttcgtgttactcagGTGGATCCTATGGTTATACACTCGGCATCGGATCCAAGGCCGAACTCAGCCCTTTGTGGTGACTACTTTTACAACTATTTTGCTCGTGGCTTAGACATCC

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: EFJ28090 (Selaginella moellendorffii), 3'ss of exon 8
gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
                                                                                                 ||   || |   || |     | |    |     |||  |    || |   ||||| ||||  |||||||| || || || || |||||  | || ||  || |  | |||||||| |||||||||||||||||| ||||||| || |||||||
-----------------------------------------------------------------------------------------------gtaactatcgatatgagagagagaatcagtcacaacaatcttttcgtgttactcagGTGGATCCTATGGTTATACACTCGGCATCGGATCCGAGGCCGAACTCAGCCCTTTGTGGTGACTACTTTTACAACTATTTTGCTCGTGGCTTAGACATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
                                     ttgtcctttgctttcc  CT-rich tract
                atttgtattt  TA-rich tract