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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC

Basic information

species Arabidopsis thaliana
transcript AT3G51130.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA01G37380.1 (Glycine max), 3'ss of exon 9
gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgc---tttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
|||| || || | || | | || || | ||| | || | | || || | | || | | | ||| | | |||| ||||||||||||||||||||||| |||||| ||| ||| |||||| ||||||||||||||||||| || ||||||||||||||| ||||||||
---------------------------------------------------gtattaattttgtcta--aatatatattcatttaaggtctaaattctac-cttgaataagttttggtttgtttgaagtctgactcttaattgtaattctgtagGTTGATCAAATGGTTATTCATTCTGCTTCAGATTTTCGGCCACGGACAACTCTCTGTGGTGATTACTTTTATAATTATTTTACTCGTGGTCTGGACATCT

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA11G07910.1 (Glycine max), 3'ss of exon 9
gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
| | || | | |||| || ||| ||| || | ||| | | | | || || | |||| ||| |||||| || | |||||||||||||||||||||||||||| ||||||| ||| ||| |||||| ||||||| || |||||||| || ||||||||||||||| |||||||
---------------------------------------taccttgagcacaaagcaacttca--taatattttaagctagtaaactgcttgaat---gagttttgctatgtatg---aagtctgactcttaattgtaattc----tatagGTAGATCAAATGGTTATTCATTCTGCTTCAGATCTTCGGCCACGGACAACTCTCTGTGGAGACTACTTTTATAATTATTTTACTCGTGGTCTGGACATAT

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv04s0023g02970.t01 (Vitis vinifera), 3'ss of exon 9
gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
| ||||||| ||||| | | | | |||| | ||||| | | ||| | |||| || || | || | | |||| || || ||||| | | ||||| || |||||||| ||||| ||||| ||||||||||| ||| |||||| |||||||||||||||| ||||| |||||| ||||||||||||||| |
-----------------tttaaactt-----tatat-atgcttaa-----tccaatgtcttctgagtatttattatttatgttacctattgatg----gtattga--tggagg---gtgattttgcttgtaa--------------cacagGTTGACCAAATGGTAATTCACTCTGCCTCAGATCCTCGCCCACGGACAACTCTCTGTGGTGATTACTTCTACAATTATTTTGATCGTGGTTTGGACATAC

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: EFJ29519 (Selaginella moellendorffii), 3'ss of exon 8
gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
| | || | | | || | | ||| | || | ||||| |||| |||||||| || || || || ||||| | || || || | | |||||||| |||||||||||||||||| ||||||| || |||||||
------------------------------------------------------------------------------------------gtaactatcgacatgagagagagagagaatcagt-cacaacaatcttttcgtgttactcagGTGGATCCTATGGTTATACACTCGGCATCGGATCCAAGGCCGAACTCAGCCCTTTGTGGTGACTACTTTTACAACTATTTTGCTCGTGGCTTAGACATCC

upper sequence: AT3G51130.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: EFJ28090 (Selaginella moellendorffii), 3'ss of exon 8
gtgatctataccgtatctctaaacttgtttgtatatcacgatcagatgcttccattagcttctcttactatgttacctgcgttatctgttacagttcaatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
|| || | || | | | | ||| | || | ||||| |||| |||||||| || || || || ||||| | || || || | | |||||||| |||||||||||||||||| ||||||| || |||||||
-----------------------------------------------------------------------------------------------gtaactatcgatatgagagagagaatcagtcacaacaatcttttcgtgttactcagGTGGATCCTATGGTTATACACTCGGCATCGGATCCGAGGCCGAACTCAGCCCTTTGTGGTGACTACTTTTACAACTATTTTGCTCGTGGCTTAGACATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatactcaactggacatttgtatttctgcttctgaattgtcctttgctttccagGTAGATCAAATGGTTATTCATTCTGCGTCAGATCCTCGACCAAAAACAACTATCTGTGGTGATTACTTTTACAACTATTTTACTCGTGGTTTGGACATCC
                                     ttgtcctttgctttcc  CT-rich tract
 atttgtattt  TA-rich tract