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gtatcttgatagcttatttttgctctttcagctgtaactcttttgctctatgagcttcgtaatctcaaacttttataatcacctgggcagGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTGAGTTGCAGAAGATGGGGTTTGAAGTTCTTGGAGACAATGATTCACCAGT
species | Arabidopsis thaliana |
transcript | AT3G48780.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AATCATATCGGCGATAAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAG GGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTGEST: gi|116478474|gb|EG521066.1|EG521066
genomic: AATCATATCGGCGATAAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAGgtatcttgat ... acctgggcagGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTG
EST: AATCATATCGGCGATAAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAG GGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTGEST: gi|124993293|gb|EL065562.1|EL065562
genomic: AATCATATCGGCGATAAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAGgtatcttgat ... acctgggcagGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTG
EST: GATAAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAG GGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTGEST: gi|86087576|gb|DR383335.1|DR383335
genomic: GATAAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAGgtatcttgat ... acctgggcagGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTG
EST: CGATAAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAG GGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAAC-TTTTCAGGGCTGEST: gi|19878645|gb|AU239476.1|AU239476
genomic: CGATAAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAGgtatcttgat ... acctgggcagGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTG
EST: AATCATATCGGCGATAAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAG GGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTG
genomic: AATCATATCGGCGATAAAGGTTATCCTTGGAGAGGATGGTTCAAACAGAGgtatcttgat ... acctgggcagGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTG
aactcttttgctctatgagcttcgtaatctcaaacttttataatcacctgggcagGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTGAGTTGCAGAAGATGGGGTTTGAAGTTCTTGGAGACAATGATTCACCAGT
ctgtaac putative branch site (score: 3)
tcaaacttttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcttgatagcttatttttgctctttcagctgtaactcttttgctctatgagcttcgtaatctcaaacttttataatcacctgggcagGGGCACAAAAGTTAGCAAGAATAAGGGAGAACAGCAACTTTTTCAGGGCTGAGTTGCAGAAGATGGGGTTTGAAGTTCTTGGAGACAATGATTCACCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA