Sequence
atgc intronic sequence ATGC exonic sequencegtttcgttcctatactggctactagtcattgtgatgtaggtagggttagcttacttacttgacaaagcaaatgtgtgtgttctgcagAAAATGTCTCAGTCCATGGACCTATGACTCAGTCCCAGTTCTTGGGTTCGCTTGGAATAAACTTCAGAGTTGATGCATTGCTACAGAATTGTAACGACGA
Basic information
species | Arabidopsis thaliana |
transcript | AT3G28700.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G28700.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: LOC_Os01g40620.2 (Oryza sativa), 3'ss of exon 9
gttt-cgttcctatactggctactagtcattgtgatgtaggtagggttagctta--cttacttgacaaagcaaatgtgtgtgttctgcagAAAATGTCTCAGTCCATGGACCTATGACTCAGTCCCAGTTCTTGGGTTCGCTTGGAATAAACTTCAGAGTTGATGCATTGCTACAGAATTGTAACGACGA
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gtttgcacagatatcttaaatcctttctgct-tgtttttctcatgtccagacaaacatttcttactaggtctgtcttgaactttctgcagATGATATTTCTGTTCATGGGCCAATGACTCAATCCCAGTTCTTGGGCTCTCTTGGTATAAACTTCCGTGTGGAAGCCCTGCTCCAAAACTGTGCTACTGA
upper sequence: AT3G28700.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GRMZM2G086052_T03 (Zea mays), 3'ss of exon 9
gtttcgttcctatactggc--tactagtcattgtgatgtaggtagggttagcttacttacttgacaaagcaaatgt----gtgtgttctgcagAAAATGTCTCAGTCCATGGACCTATGACTCAGTCCCAGTTCTTGGGTTCGCTTGGAATAAACTTCAGAGTTGATGCATTGCTACAGAATTGTAACGACGA
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-------gtatgcactggcgttattactctactttttgctggtatcaacag-ttacttacacgagaattttttttttctcgtaacttgcgcagACGATATCTCGGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTCTCGGCATCAACTTCAGGGTAGAAGCTCTCCTGCAGAACTGCACCGAGGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164146171|gb|ES016104.1|ES016104EST: TGCTTATGTCGACTTTCCTTCAATAAAACACTCCGCTGAGGAAGCTTCAG AAAATGTCTCAGTCCATGGACCTATGACTCAGTCCC
genomic: TGCTTATGTCGACTTTCCTTCAATAAAACACTCCGCTGAGGAAGCTTCAGgtttcgttcc ... tgttctgcagAAAATGTCTCAGTCCATGGACCTATGACTCAGTCCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgtaggtagggttagcttacttacttgacaaagcaaatgtgtgtgttctgcagAAAATGTCTCAGTCCATGGACCTATGACTCAGTCCCAGTTCTTGGGTTCGCTTGGAATAAACTTCAGAGTTGATGCATTGCTACAGAATTGTAACGACGA
ttactta TA-rich tract