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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctagaatttttacaactttagaaaagtcagtgtctatcttgttagtgttaattagtcgctattcattaatccgcagGTTCTTGAGATGGTTAACAACCCTCACTATCTCTACCGAATGACCATTTTGCGTGCGGTGTCTCTTCTTGCACCTGTAATGGGCTCAGAGATTACATGCT

Basic information

species Arabidopsis thaliana
transcript AT3G25800.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125197471|gb|EL212425.1|EL212425
EST:     TTGCTGAGGAATTTGGTCCTGAATGGGCAATGCAACATATAGTTCCTCAG                         GTTCTTGAGATGG
genomic: TTGCTGAGGAATTTGGTCCTGAATGGGCAATGCAACATATAGTTCCTCAGgtttgtctag ... taatccgcagGTTCTTGAGATGG
EST: gi|301501085|gb|HO206625.1|HO206625
EST:     TTGCTGAGGAATTTGGTCCTGAATGGGCAATGCAACATATAGTTCCTCAG                         GTTCTTGAGATGGTTAACAACCCTCACTATCTCTACCGAATGACCATTTTG
genomic: TTGCTGAGGAATTTGGTCCTGAATGGGCAATGCAACATATAGTTCCTCAGgtttgtctag ... taatccgcagGTTCTTGAGATGGTTAACAACCCTCACTATCTCTACCGAATGACCATTTTG
EST: gi|124901697|gb|EH975777.1|EH975777
EST:     TAGTTCCTCAG                         GTTCTTGAGATGGTTAACAACCCTCACTATCTCTACCGAATGACCATTTTG
genomic: TAGTTCCTCAGgtttgtctag ... taatccgcagGTTCTTGAGATGGTTAACAACCCTCACTATCTCTACCGAATGACCATTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaagtcagtgtctatcttgttagtgttaattagtcgctattcattaatccgcagGTTCTTGAGATGGTTAACAACCCTCACTATCTCTACCGAATGACCATTTTGCGTGCGGTGTCTCTTCTTGCACCTGTAATGGGCTCAGAGATTACATGCT
                                          cattaat  putative branch site (score: 3)
                                      tattcattaat  TA-rich tract