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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtctcctgcaaccaaattttgatttcgttacttatatttcaattttgttcttaacgtccatatgtaatgccaatatttttttctgtattcagCTATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTG

Basic information

species Arabidopsis thaliana
transcript AT3G25585.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414049|gb|EG456641.1|EG456641
EST:     ACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATG                         CTATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTG
genomic: ACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATGgtatagtctc ... ctgtattcagCTATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTG
EST: gi|125319744|gb|EL333829.1|EL333829
EST:     TTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATG                         CTATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTG
genomic: TTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATGgtatagtctc ... ctgtattcagCTATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTG
EST: gi|301502798|gb|HO208338.1|HO208338
EST:     ACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATG                         CTATATCCCTTAGTCACGTTAATTGCAGGA
genomic: ACAAAGTTGTACATTCAAGAAATGGAAGCATGCTTCTAGCATTAGCTATGgtatagtctc ... ctgtattcagCTATATCCCTTAGTCACGTTAATTGCAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaattttgttcttaacgtccatatgtaatgccaatatttttttctgtattcagCTATATCCCTTAGTCACGTTAATTGCAGGAGTTCTGATTTG
           tcttaac  putative branch site (score: 2)
                                      tttttttctgtattc  putative PPT
                                  aatatttttttctgta  TA-rich tract