1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatatgatacgaactacttattgctttatgagttataagtcgaacaacatcttacatggttaagtttcttctcagGCTGTCAAATTCATTGAATACGACACATCCTTCAGTGAGGAAGAGAAGAAGCAAGCAAAAGCATTGAAGGTGGCATGCAATCTAAACGATGCAGCCTGCA
species | Arabidopsis thaliana |
transcript | AT3G25230.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCCAAGAGATATGAGAAG GCTGTCAAATTCATTGAATACGACACATCCTTCAGTGAGGAAGAGAAGAAGEST: gi|164223275|gb|ES072554.1|ES072554
genomic: TCCAAGAGATATGAGAAGgtatatgata ... ttcttctcagGCTGTCAAATTCATTGAATACGACACATCCTTCAGTGAGGAAGAGAAGAAG
EST: CCAAGTTTAAAGGAGGCAAATATTCCCTGGCTTCCAAGAGATATGAGAAG GCTGTCAAATTCATTGAATACGACACATCCTTCAGTGAGGAAGAGAAG
genomic: CCAAGTTTAAAGGAGGCAAATATTCCCTGGCTTCCAAGAGATATGAGAAGgtatatgata ... ttcttctcagGCTGTCAAATTCATTGAATACGACACATCCTTCAGTGAGGAAGAGAAG
ttgctttatgagttataagtcgaacaacatcttacatggttaagtttcttctcagGCTGTCAAATTCATTGAATACGACACATCCTTCAGTGAGGAAGAGAAGAAGCAAGCAAAAGCATTGAAGGTGGCATGCAATCTAAACGATGCAGCCTGCA
atcttac putative branch site (score: 3)
tttcttctc putative PPT
agttataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatgatacgaactacttattgctttatgagttataagtcgaacaacatcttacatggttaagtttcttctcagGCTGTCAAATTCATTGAATACGACACATCCTTCAGTGAGGAAGAGAAGAAGCAAGCAAAAGCATTGAAGGTGGCATGCAATCTAAACGATGCAGCCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG