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gtaagttgcattggttttctttgctcaagttgcttcttatatacgagtccctgttctcttaagagttctaaaaagagtattataaattctgctttgatccatcttccttacgatgcagCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGGAGCAG
species | Arabidopsis thaliana |
transcript | AT3G20870.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGG CCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGEST: gi|86083065|gb|DR378824.1|DR378824
genomic: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGGgtaagttgca ... tacgatgcagCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGG
EST: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGG CCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGEST: gi|116396456|gb|EG439048.1|EG439048
genomic: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGGgtaagttgca ... tacgatgcagCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGG
EST: GTTGGCAACACTTTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGG CCTATTTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGEST: gi|116396457|gb|EG439049.1|EG439049
genomic: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGGgtaagttgca ... tacgatgcagCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGG
EST: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGG CCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGEST: gi|116403229|gb|EG445821.1|EG445821
genomic: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGGgtaagttgca ... tacgatgcagCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGG
EST: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGG CCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGEST: gi|86082548|gb|DR378307.1|DR378307
genomic: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGGgtaagttgca ... tacgatgcagCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGG
EST: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGG CCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGEST: gi|164182555|gb|ES129932.1|ES129932
genomic: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGGgtaagttgca ... tacgatgcagCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGG
EST: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGG CCTATCTATTCCCGAGAAG
genomic: GTTGGCAACACTCTCTGGTTTAGCTGAGCCTCTAGGTGTAATTATCGTGGgtaagttgca ... tacgatgcagCCTATCTATTCCCGAGAAG
agttctaaaaagagtattataaattctgctttgatccatcttccttacgatgcagCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGGAGCAG
tccttac putative branch site (score: 2)
tccatcttccttac CT-rich tract
taaaaagagtattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgcattggttttctttgctcaagttgcttcttatatacgagtccctgttctcttaagagttctaaaaagagtattataaattctgctttgatccatcttccttacgatgcagCCTATCTATTCCCGAGAAGCTTAAGTCCAGAAATCCTTGAAGGTTTGTTGGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG