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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtttatctttctgagtttgatattagataaactgttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctagGTCTCACCATGAAAAACTCGTCATCGTCGATAATCAGGTTTGCTTTATCGGAGGGCTAGACTTGTGTTTTGGCCGATATGACACGTTTGAACATAAAGTT

Basic information

species Arabidopsis thaliana
transcript AT3G16785.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16785.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 9
gtatgatatggtggacagttctaatatatcactctaatatgtcacaatgctctttctagtttatctttctgagtttgatattagataaactgttaaaaaactcctatctgaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctagGTCTCACCATGAAAAACTCGTCATCGTCGATAATCAGGTTTGCTTTATCGGAGGGCTAGACTTGTGTTTTGGCCGATATGACACGTTTGAACATAAAGTT
                                                    | | || ||||   ||   |||   ||   ||||  |    |  |    |  ||| |        ||  ||      | |    ||||  | |  ||||  | | |    ||||| |||||||||||||| ||||| || ||| | ||| |||||||||| ||||| || ||  | || |||||||| |||||||| || ||||| ||||| 
---------------------------------------------------gtatgtaatttac--tttgaagtcctat---agatgtaagaattgagctatagtatttcctgttgtaatgaatttttgaagttgctgat-gtcatttctgtttatatac--agGTCCCACCATGAAAAACTTGTCATTGTTGATTACCAGATTTGCTTTATTGGAGGTCTGGATCTATGCTTTGGCCGTTATGACACATTGGAACACAAAGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaccacaaaaataagcgggaaggacattgattattacctctgcgtgtctttctagGTCTCACCATGAAAAACTCGTCATCGTCGATAATCAGGTTTGCTTTATCGGAGGGCTAGACTTGTGTTTTGGCCGATATGACACGTTTGAACATAAAGTT
                                            tgtctttct  CT-rich tract
                         attgattatta  TA-rich tract