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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagactcctactcccaaatcaaaaccagaaaacctgacttaactttttttttttgcattttgacattggaagGATGGGGAGTTACCAGTGCTTCCTTTATCGGTTTATGGAGCTGTAGCAATGGCGCACAGCGAAAACTCAGAAGAATACTCTTCTCCTTACCAATTCTTCT

Basic information

species Arabidopsis thaliana
transcript AT3G15520.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085779|gb|DR381538.1|DR381538
EST:     TGCCTTCTGGACAATTCGAACCTCTCTACAGAACGCCATTGAGTGTCCAG                         GATGGGGAGTTACCAGTGCTTCCTTTATCGGTTTATGGAGCTGTAGCAATG
genomic: TGCCTTCTGGACAATTCGAACCTCTCTACAGAACGCCATTGAGTGTCCAGgtatagactc ... acattggaagGATGGGGAGTTACCAGTGCTTCCTTTATCGGTTTATGGAGCTGTAGCAATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaaaaccagaaaacctgacttaactttttttttttgcattttgacattggaagGATGGGGAGTTACCAGTGCTTCCTTTATCGGTTTATGGAGCTGTAGCAATGGCGCACAGCGAAAACTCAGAAGAATACTCTTCTCCTTACCAATTCTTCT
                                        ttttgac  putative branch site (score: 3)
                     ttaacttttttttttt  TA-rich tract