Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataactcattaaactttttttattgtcaaaaagtattatacatcaaataatcttatggttttctaactatgtaatcatctggttgcagAGAATAAGTCTGTACAGAATCCACCATTGGTTGAGACAAAGAAACTGGATACGTCATTGTCGATGAATCTACGTCCTCCACCATCTGAGCGACATAAGTC

Basic information

species Arabidopsis thaliana
transcript AT3G14350.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164096796|gb|ES139281.1|ES139281
EST:     TAATAACATTAACCAACCCATTATACTAGCGTCCAATGACTTTCATCAAG                         AGAATAAGTCTGTACAGAATCCACCATTGGTTGAGACAAA
genomic: TAATAACATTAACCAACCCATTATACTAGCGTCCAATGACTTTCATCAAGgtaataactc ... ctggttgcagAGAATAAGTCTGTACAGAATCCACCATTGGTTGAGACAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatacatcaaataatcttatggttttctaactatgtaatcatctggttgcagAGAATAAGTCTGTACAGAATCCACCATTGGTTGAGACAAAGAAACTGGATACGTCATTGTCGATGAATCTACGTCCTCCACCATCTGAGCGACATAAGTC
                           ttctaac  putative branch site (score: 1)
        atcaaataatcttat  TA-rich tract