1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagcttttgttctcaatacgaatcctcgataggaaagaaccaatcagtctttatttagaatgttgtgaaatcgttatcatgttgtgcagGTCTTCTGTTCTGTCGGCTACAGCAAGTTTTCTGATTGCATCGCTGAGACTTTTACCTATGTCAGCTGCACGGCTGCTTGTATCTAAATCCATTGGAGCT
species | Arabidopsis thaliana |
transcript | AT3G11620.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGAACCAACAATCAACAAAGCAATCATTAATTGGCAAACTTGCAGC GTCTTCTGTTCTGTCGGCTACAGCAAGTTTTCTGATTGCATCGCTGAGACTEST: gi|86060664|gb|DR356421.1|DR356421
genomic: ACTTTGAACCAACAATCAACAAAGCAATCATTAATTGGCAAACTTGCAGCgtgagctttt ... tgttgtgcagGTCTTCTGTTCTGTCGGCTACAGCAAGTTTTCTGATTGCATCGCTGAGACT
EST: ACTTTGAACCAACAATCAACAAAGCAGTCATTAATTGGCAAACTTGCAGC GTCTTCTGTTCTGTCGGCTACAGCAAGTTTTCTGATTGCATCGCTGAGACTEST: gi|86060666|gb|DR356423.1|DR356423
genomic: ACTTTGAACCAACAATCAACAAAGCAATCATTAATTGGCAAACTTGCAGCgtgagctttt ... tgttgtgcagGTCTTCTGTTCTGTCGGCTACAGCAAGTTTTCTGATTGCATCGCTGAGACT
EST: ACTTTGAACCAACAATCAACAAAGCAATCATTAATTGGCAAACTTGCAGC GTCTTCTGTTCTGTCGGCTACAGCAAGTTTTCTGATTGCATCGCTGAGACT
genomic: ACTTTGAACCAACAATCAACAAAGCAATCATTAATTGGCAAACTTGCAGCgtgagctttt ... tgttgtgcagGTCTTCTGTTCTGTCGGCTACAGCAAGTTTTCTGATTGCATCGCTGAGACT
aagaaccaatcagtctttatttagaatgttgtgaaatcgttatcatgttgtgcagGTCTTCTGTTCTGTCGGCTACAGCAAGTTTTCTGATTGCATCGCTGAGACTTTTACCTATGTCAGCTGCACGGCTGCTTGTATCTAAATCCATTGGAGCT
tttatttagaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttttgttctcaatacgaatcctcgataggaaagaaccaatcagtctttatttagaatgttgtgaaatcgttatcatgttgtgcagGTCTTCTGTTCTGTCGGCTACAGCAAGTTTTCTGATTGCATCGCTGAGACTTTTACCTATGTCAGCTGCACGGCTGCTTGTATCTAAATCCATTGGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT