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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctttcactctccaaaaacttagttgtaactgacttatatcattttgtcttccaattctgtcaaccttattttttactttgtgcagGGATAAGTCACAATGATGAAGTTGAAACTGCCAGTATCATGCCCTTTGTTCAA

Basic information

species Arabidopsis thaliana
transcript AT3G10740.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125048344|gb|EL120613.1|EL120613
EST:     ATGGCAGAAGACATCGGTGCAGCCCCGATATGGGTGTTTAACAACG                         GGATAAGTCACAATAGAATGAAGTTGAAACTGCCAGTATCAT
genomic: ATGGCAGAAGACATCGGTGCAGCCCCGATATGGGTGTTTAACAACGgtattctttc ... ctttgtgcagGGATAAGTCACAAT-GA-TGAAGTTGAAACTGCCAGTATCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacttatatcattttgtcttccaattctgtcaaccttattttttactttgtgcagGGATAAGTCACAATGATGAAGTTGAAACTGCCAGTATCATGCCCTTTGTTCAA
 aactgac  putative branch site (score: 2)
                                 ccttattttttacttt  putative PPT
                                   ttattttttactttgt  TA-rich tract