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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataagaaaaatttgaaacgttttggttacattttttccaacagaaaatgaaaacatgatacatatatcctttgcagCTATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAA

Basic information

species Arabidopsis thaliana
transcript AT3G06370.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G06370.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: LOC_Os11g42790.1 (Oryza sativa), 3'ss of exon 7
---------------------------gta-ataagaaaaatttgaaacgttttggttacatttt-ttccaacagaaaa--tgaaaacatgatacatatatcctttgcagCTATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAA
                            || ||     | ||||||    | |  | || ||||  ||  ||  || ||  ||| |  |   |   | | |   | |||| |  |  | |||||   |||  | || ||||||||||| || ||||| ||||| |||||||| ||||| ||||| ||||| |  |||| |||||| || |
gtaagcaccctgtactattagcatcatatagatcctgcagatttgagcaatgtcagctaaatttaattgtaatggataatctgatattaacctgtttctttttgtggcagTTGCTTGATTTGAGTGGTATTCTTACGGTGTTCTTCTGTGGTATTGTAATGTCGCACTATACCTGGCATAATGTAACAGAGAGTTCCAGGGTCACAACCA

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA17G02560.1 (Glycine max), 3'ss of exon 7
gtaataagaaaaatttgaaacgttttggttacattttttccaa--cagaaaatgaaaacatgataca---tatatcctttgcagCTATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAA
    |||||||| | |   |   |      ||    |||  |    | |||||   ||    |  ||   ||| || || |||||||||    || ||  | ||  ||||||| ||||||||||| ||||||||||||||||| || ||||| ||||| ||||| |  || |  || || || |
---gtaagaaaattctctgaaactcgacccaccacctttgtagtgtaaaaaattccaatgctaaccaatttatttctttggcagCTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCA

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA07G38160.1 (Glycine max), 3'ss of exon 8
gtaataagaaaaatttgaaacgttttggttacattttttccaacagaaaatgaaaacatgat--acatatatcctttgcagCTATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAA
    ||||||   | |   |   || ||  || |||||      |  || |   |   | |   |  ||| || ||  ||||||||    || ||  | ||  ||||||| ||||||||||| ||||||||||||||||| || ||||| ||||| ||||| |  || |  || || || |
---gtaagaattttctctgaaactt-ggccacctttttagtgtaaataattcccatgctaaccgatttatttctttgacagCTATTTTCTTTAAGTGCCATTCTGACTGTTTTCTTCTGCGGCATTGTTATGTCTCACTACACGTGGCATAATGTGACAGAGAGTTCAAGAGTGACAACCA

upper sequence: AT3G06370.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv05s0020g01960.t01 (Vitis vinifera), 3'ss of exon 9
------------------------------------------gtaataagaaaaatttgaaacgttttggttacattttttcca-acagaaaatgaaaacatgatacatatatcctttgcagCTATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAA
                                           |  |         || | ||  ||  |   ||   |   || |  ||   | |       ||   ||| |   || ||||| ||| | || ||  | ||  | ||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || || |  || |  || ||||| |
gtaagatatcccacaacttgctgggaaatccttccctgacccctgtttgctctttatttatactcttgagccccaaaataagcacatggaccttaattttggaattgttatttgtcttacagCTGTTCTATTTAAGTGCCATTCTCACTGTGTTCTTTTGCGGGATTGTCATGTCTCACTACACATGGCATAATGTGACTGAAAGTTCAAGAGTGACTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggttacattttttccaacagaaaatgaaaacatgatacatatatcctttgcagCTATTCCACTTGAGCTCTATCTTGACTGTGTTCTTCTGCGGGATTGTTATGTCTCACTATACATGGCACAATGTTACAGATAAATCCAAGGTCACTACAA
                                           tatccttt  CT-rich tract
     tacatttttt  TA-rich tract