1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatatattttcgatatatatatatatatagaaccaagttttcttgaagatatcacagtaaattagaaaagtttaataatctaatactaatttaaacaatttcagGCGATTAGAAGCGGATAGGTTTTTCACGAGTGATTTCAATGAAACGATTTACACGAAGAAGGGGCTTGAATGGGTGAATACTACAGAGAGTCTCAAGGAT
species | Arabidopsis thaliana |
transcript | AT3G01420.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTGCTATCAGTGAGACTGCTTTTTACATTTTCCTCATCATGGCCACAAG GCGATTAGAAGCGGATAEST: gi|124985575|gb|EL058157.1|EL058157
genomic: TTTGCTATCAGTGAGACTGCTTTTTACATTTTCCTCATCATGGCCACAAGgtatatattt ... acaatttcagGCGATTAGAAGCGGATA
EST: CATCATGGCCACAAG GCGATTAGAAGCGGATAGGTTTTTCACGAGTGATTTCAATGAAACGATTTA
genomic: CATCATGGCCACAAGgtatatattt ... acaatttcagGCGATTAGAAGCGGATAGGTTTTTCACGAGTGATTTCAATGAAACGATTTA
tatcacagtaaattagaaaagtttaataatctaatactaatttaaacaatttcagGCGATTAGAAGCGGATAGGTTTTTCACGAGTGATTTCAATGAAACGATTTACACGAAGAAGGGGCTTGAATGGGTGAATACTACAGAGAGTCTCAAGGAT
tactaat putative branch site (score: 1)
taaattagaaaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatattttcgatatatatatatatatagaaccaagttttcttgaagatatcacagtaaattagaaaagtttaataatctaatactaatttaaacaatttcagGCGATTAGAAGCGGATAGGTTTTTCACGAGTGATTTCAATGAAACGATTTACACGAAGAAGGGGCTTGAATGGGTGAATACTACAGAGAGTCTCAAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG