1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagttcttaaccagctcaattactcctctcttaaacaaattgtagttaaaaaagagagtctaagttcaggtttgggtttgtattatagGCAACACCAGAGCTCGAGTATGGAAGGATGAACATAGGAAGCCGACCATCAAAACGTAAACCAAGCGGAGGAATCGAGTCGCTGCGTGCAATCCCGTGGA
species | Arabidopsis thaliana |
transcript | AT2G42600.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTG GCAACACCAGAGCTCGAGTTATGGAAGGATGAACATAGGAAGCCGACCATCEST: gi|124749862|gb|EH839992.1|EH839992
genomic: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTGgtaagttctt ... tgtattatagGCAACACCAGAGCTCGAGT-ATGGAAGGATGAACATAGGAAGCCGACCATC
EST: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTG GCAACACCAGAGCTCGAGTATGGAAGGATGAACATAGGAAGCCGACCATCAEST: gi|164205988|gb|EL975482.1|EL975482
genomic: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTGgtaagttctt ... tgtattatagGCAACACCAGAGCTCGAGTATGGAAGGATGAACATAGGAAGCCGACCATCA
EST: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTG GCAACACCAGAGCTCGEST: gi|86065049|gb|DR360806.1|DR360806
genomic: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTGgtaagttctt ... tgtattatagGCAACACCAGAGCTCG
EST: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTG GCAACACCAGAGCTCGAGTATGGAAGGATGAACATAGGAAGCCGACCATCAEST: gi|86068615|gb|DR364372.1|DR364372
genomic: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTGgtaagttctt ... tgtattatagGCAACACCAGAGCTCGAGTATGGAAGGATGAACATAGGAAGCCGACCATCA
EST: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTG GCAACACCAGAGCTCGAGTATGGAAGGATGAACATAGGAAGCCGACCATCAEST: gi|124816329|gb|EH901195.1|EH901195
genomic: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTGgtaagttctt ... tgtattatagGCAACACCAGAGCTCGAGTATGGAAGGATGAACATAGGAAGCCGACCATCA
EST: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTG GCAACACCAGAGCTCGAGTATGGAA
genomic: ACCGTTCTGTTGTCTTCAAGGAGCCCCGTTTTGTTGAGTACTTCCGTCTGgtaagttctt ... tgtattatagGCAACACCAGAGCTCGAGTATGGAA
aacaaattgtagttaaaaaagagagtctaagttcaggtttgggtttgtattatagGCAACACCAGAGCTCGAGTATGGAAGGATGAACATAGGAAGCCGACCATCAAAACGTAAACCAAGCGGAGGAATCGAGTCGCTGCGTGCAATCCCGTGGA
attgtagttaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcttaaccagctcaattactcctctcttaaacaaattgtagttaaaaaagagagtctaagttcaggtttgggtttgtattatagGCAACACCAGAGCTCGAGTATGGAAGGATGAACATAGGAAGCCGACCATCAAAACGTAAACCAAGCGGAGGAATCGAGTCGCTGCGTGCAATCCCGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA