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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccccctttgttttcttaccctttgtagactgattaaagaacagacgcatcactcatcttgtcttttgaaaatatccagGTATGATCCTGCTACCGGATTACTGACCGGCACAAAAGATGGGACACTCGTCAATGTTTACTTGAGGTTGTTTGGTCCTAAATCAGAAAAGTCTCTTTGC

Basic information

species Arabidopsis thaliana
transcript AT2G41490.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86083719|gb|DR379478.1|DR379478
EST:     CTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAG                         GTATGATCCTGCTACCGGATTACTGACCGGCACAAAAGATGGGACACTCGT
genomic: CTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAGgtaaccccct ... aaatatccagGTATGATCCTGCTACCGGATTACTGACCGGCACAAAAGATGGGACACTCGT
EST: gi|116441309|gb|EG483901.1|EG483901
EST:     CTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAG                         GTATGATCCTGCTACCGGATTACTGACCGGTACAAAAGATGGGACACTCGT
genomic: CTTGCTGGGATTGTGAAATGTCCGCGCCATCGTCTCCCAAGgtaaccccct ... aaatatccagGTATGATCCTGCTACCGGATTACTGACCGGCACAAAAGATGGGACACTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagactgattaaagaacagacgcatcactcatcttgtcttttgaaaatatccagGTATGATCCTGCTACCGGATTACTGACCGGCACAAAAGATGGGACACTCGTCAATGTTTACTTGAGGTTGTTTGGTCCTAAATCAGAAAAGTCTCTTTGC
   gactgat  putative branch site (score: 3)
                                     tcttttgaaaatat  TA-rich tract