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gtttgtggcttcaagtgcgtttttgagtaagatgttgatcttttggcttccgcttatctaagtttaatatgtttttcgcagATTCGGAATAATTTTATCCATAGATTATTTGAAGACCCTTTAATTCCGTTGTCAAGTATCAAAGATGATGACCACCTTGCTGCATACAAACTTTCAAAGT
species | Arabidopsis thaliana |
transcript | AT2G40930.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAACAAATGCTTGTTCCTTGAAGCAAAGTGAAGAGCTGAAACTTGCAGAG ATTCGGAATAATTTTATCCATAGATTATTTGAAGACCCTTTAATTCCGTTGEST: gi|116470354|gb|EG512946.1|EG512946
genomic: TAACAAATGCTTGTTCCTTGAAGCAAAGTGAAGAGCTGAAACTTGCAGAGgtttgtggct ... tttttcgcagATTCGGAATAATTTTATCCATAGATTATTTGAAGACCCTTTAATTCCGTTG
EST: TAACAAATGCTTGTTCCTTGAAGCAAAGTGAAGAGCTGAAACTTGCAGAG ATTCGGAATAATTTTATCCATAGATTATTTGAAGACCCTTTAATTCCGTTG
genomic: TAACAAATGCTTGTTCCTTGAAGCAAAGTGAAGAGCTGAAACTTGCAGAGgtttgtggct ... tttttcgcagATTCGGAATAATTTTATCCATAGATTATTTGAAGACCCTTTAATTCCGTTG
gtaagatgttgatcttttggcttccgcttatctaagtttaatatgtttttcgcagATTCGGAATAATTTTATCCATAGATTATTTGAAGACCCTTTAATTCCGTTGTCAAGTATCAAAGATGATGACCACCTTGCTGCATACAAACTTTCAAAGT
gtttaat putative branch site (score: 4)
tgtttttc CT-rich tract
ttatctaagtttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtggcttcaagtgcgtttttgagtaagatgttgatcttttggcttccgcttatctaagtttaatatgtttttcgcagATTCGGAATAATTTTATCCATAGATTATTTGAAGACCCTTTAATTCCGTTGTCAAGTATCAAAGATGATGACCACCTTGCTGCATACAAACTTTCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC