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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttttacttactctcatagaacaaaaatgcttgtatcatgattttcttttgtttaggcctcaactagtgaaaccattagATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATGCTTATACCGTCACAACCAGGTGATGAGCCATTGCCTCATGATGTGTTGG

Basic information

species Arabidopsis thaliana
transcript AT2G34560.2
intron # 9
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831791|gb|CK121475.1|CK121475
EST:     ATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGA                         ATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATG
genomic: ATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAgtatcctttt ... aaaccattagATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATG
EST: gi|124781826|gb|EH871769.1|EH871769
EST:     TCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAAGAAACGA                         ATTCTTGTACCTTTACCGGAT
genomic: TCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGA-GAAACGAgtatcctttt ... aaaccattagATTCTTGTACCTTTACCGGAT
EST: gi|164097082|gb|EL984851.1|EL984851
EST:     TGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGA                         ATTCTTGTACCTTTAC
genomic: TGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAgtatcctttt ... aaaccattagATTCTTGTACCTTTAC
EST: gi|86084400|gb|DR380159.1|DR380159
EST:     ATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGA                         ATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATG
genomic: ATCTCCCCTGGGAACTAGATGCAGCTATGCTCCGGCGTCTAGAGAAACGAgtatcctttt ... aaaccattagATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATG
EST: gi|125267983|gb|EL282068.1|EL282068
EST:     ATGCAGCTATGCTCCGGCGTCTAGAGAAACGA                         ATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATG
genomic: ATGCAGCTATGCTCCGGCGTCTAGAGAAACGAgtatcctttt ... aaaccattagATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgcttgtatcatgattttcttttgtttaggcctcaactagtgaaaccattagATTCTTGTACCTTTACCGGATCCAGAAGCAAGAAGAGGAATGTTCGAGATGCTTATACCGTCACAACCAGGTGATGAGCCATTGCCTCATGATGTGTTGG
 ggcctcaac  putative branch site 
                attttcttttgttta  TA-rich tract