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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaactcagaataagtgctgctagtagctggatagagtccattttataaacttgactggttgtcttactaactttccgttcctctgaacagAGAGGTGCTCCAAGCAGCAGGTTTCTTATCTATTTGAACAAACATATCATACCTGTTTTTGACAAG

Basic information

species Arabidopsis thaliana
transcript AT2G34040.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164157907|gb|EL994145.1|EL994145
EST:     ATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCG                         AGAGGTGCTCCAAGCAGCAGGTTTCTTATCTATTTGAACAAACATATCATA
genomic: ATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCGgtatgaactc ... ctctgaacagAGAGGTGCTCCAAGCAGCAGGTTTCTTATCTATTTGAACAAACATATCATA
EST: gi|125053075|gb|EL124428.1|EL124428
EST:     TATTGACAGGTTGTATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCG                         AGAGGTGCTCCAAGCAGCAGGTTTCTTATCTA
genomic: TATTGACAGGTTG-ATATCATGCCTGCAACTGGCTCTTCCCTTTTTTGCGgtatgaactc ... ctctgaacagAGAGGTGCTCCAAGCAGCAGGTTTCTTATCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccattttataaacttgactggttgtcttactaactttccgttcctctgaacagAGAGGTGCTCCAAGCAGCAGGTTTCTTATCTATTTGAACAAACATATCATACCTGTTTTTGACAAG
                             tactaac  putative branch site (score: 0)
                                   ctttccgttcctct  CT-rich tract
     ttttataaacttga  TA-rich tract