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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttgaactcctttgtaccgcatcatttatgcctcattctccatctaacttctcttacaaaatgttccagGCATGTTCTGCACAAATATGCAAATGAGGATGTTACATTAGGTGCTTGGTTTATCGGGCTTGATGTGACACATATCGATGATAGAAGACTATGTTGTGGC

Basic information

species Arabidopsis thaliana
transcript AT2G32430.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: LOC_Os03g38050.1 (Oryza sativa), 3'ss of exon 9
------------gtaagatttgaactc-ctttgt--accgcatcatt-tatgcctcat----tctccatctaacttctcttacaaa--------atgttccagGCATGTTCTGCACAAATATGCAAATGAGGATGTTACATTAGGTGCTTGGTTTATCGGGCTTGATGTGACACATATCGATGATAGAAGACTATGTTGTGGC
             | |||||||   |  ||||||  |   || |||  ||||  | ||     ||| | | | | |     |   |        ||||| |||||||||||| ||||||||||| |||||||||||  ||||||| || ||||| || || || || ||   |||  |||||||| | || || || || || 
gtaagaaatttcttcagatttggtttttctttgttgattacaccataatatgttttatctaacctctacccatcattgaccatggatgatggtgatgtttcagGCATGTTCTCCACAAATATGCTAATGAGGATGTATCATTAGGAGCATGGTTCATAGGTCTAGACGTCGAACACGTCGATGATCGCAGGCTTTGCTGCGGT

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA13G38500.1 (Glycine max), 3'ss of exon 9
-----------------------------------------gtaagattt--gaactcctttg-taccgcatcatttatgcctcattctccatctaacttctcttacaaaatgttccagGCATGTTCTGCACAAATATGCAAATGAGGATGTTACATTAGGTGCTTGGTTTATCGGGCTTGATGTGACACATATCGATGATAGAAGACTATGTTGTGGC
                                          | | ||||  | |||    || |     |    || ||   ||        || | || | |       |||  |||||| ||||| ||||| ||||| |||||||||||  || ||||| |||||||||| || ||||||||||  || || |||||| ||||||| || ||||| 
gtgagtgcttcatctcacttgtggggaaaaaaacaattaaaatcaaatttatggactaaaatggtggtagaaatgttgtgatccacatgattgcttatttgtgtatttctttgtctcagGCACGTTCTCCACAAGTATGCCAATGAGGATGTCTCACTAGGTTCTTGGTTTATTGGACTTGATGTGAATCACATAGATGATCGAAGACTCTGCTGTGGT

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA12G31980.1 (Glycine max), 3'ss of exon 9
-----------------------------------------gtaagatttgaactcctttgtaccgcatcatttatgcctcattctccatctaacttctcttacaaa---atgttccagGCATGTTCTGCACAAATATGCAAATGAGGATGTTACATTAGGTGCTTGGTTTATCGGGCTTGATGTGACACATATCGATGATAGAAGACTATGTTGTGGC
                                          ||| ||||     |     |   |   ||  |||   | || | |    |  ||| |  | ||      |||  |||||| ||||| ||||| ||||| |||||||||||  || ||||| |||||||||| || || ||||||   || || |||||| ||||||| || ||||| 
gtgagtgcttcatctcacttgtgggggaaaaagcaattaaaataacatttatggactaaaatggtggtgcaaatat-tgtgatccacatgatggcttattgtgcatgtctttgtctcagGCACGTTCTCCACAAGTATGCCAATGAGGATGTCTCACTAGGTTCTTGGTTTATTGGACTAGATGTGGACCACATAGATGATCGAAGACTCTGCTGTGGT

upper sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv12s0059g00640.t01 (Vitis vinifera), 3'ss of exon 9
-------------------------------------------gtaagat-ttgaactcctttgtaccgcatcatttatgcctcattctccatctaacttctcttacaaaatgttccagGCATGTTCTGCACAAATATGCAAATGAGGATGTTACATTAGGTGCTTGGTTTATCGGGCTTGATGTGACACATATCGATGATAGAAGACTATGTTGTGGC
                                           | ||  | ||| | |  | | |  |  |  ||   |    || | |  ||     || | |     | | || |||||||||||| ||||| ||||| |||||||| ||| || | ||| |||||||||| || ||||||| |  |||||| |||||| | ||| |||||||||||
gtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcc-tcttccactttttatggttattttgtacatgattattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCACTGGGTTCTTGGTTTATTGGTCTTGATGCGGAACATATTGATGATCGGAGATTATGTTGTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccgcatcatttatgcctcattctccatctaacttctcttacaaaatgttccagGCATGTTCTGCACAAATATGCAAATGAGGATGTTACATTAGGTGCTTGGTTTATCGGGCTTGATGTGACACATATCGATGATAGAAGACTATGTTGTGGC
      atcatttat  TA-rich tract