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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttctatcttcgtaaactcattatagatggaggtttcttcttcttcttctaagttgtgtgttttgtggcattcaaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAACATCAGTGCTTGAGAGTATTGCTAGCTTTTTGTTCACATGTATTTGAGTT

Basic information

species Arabidopsis thaliana
transcript AT2G30200.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080301|gb|DR376058.1|DR376058
EST:     CTCTCTTATCCAAAGGACTTCAAAGCAGCTACGAATTGGGACCTGGAAAG                         GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: gi|116401255|gb|EG443847.1|EG443847
EST:     CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAG                         GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: gi|116378971|gb|EG421563.1|EG421563
EST:     CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAG                         GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: gi|116476496|gb|EG519088.1|EG519088
EST:     CTTTTTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAG                         GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: gi|86074247|gb|DR370004.1|DR370004
EST:     CTCTCTTATCCAAAGGACTTCAAAGCAGCTACGAATTGGGACCTGGAAAG                         GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: gi|116476495|gb|EG519087.1|EG519087
EST:     CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAG                         GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAAC
EST: gi|124709885|gb|EH801287.1|EH801287
EST:     CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAG                         GTAATTGCAGGGATATTCAAGAGAGTAGATAAAAG
genomic: CTCTCTTATCCAAAGGACTTAAAAGCAGCTACGAATTGGGACCTGGAAAGgtatttttct ... caaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaggtttcttcttcttcttctaagttgtgtgttttgtggcattcaaacaccagGTAATTGCAGGGATATTCAAGAGAGTAGATAAAAGCGCAAGTTTCGAAAACATCAGTGCTTGAGAGTATTGCTAGCTTTTTGTTCACATGTATTTGAGTT
                                          attcaaa  TA-rich tract