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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtcctgttttaacaatgcttaatttgactggtataaggtgtctgatgtgtggaatattttgacaatcacacgcagGATTTTTTCAAAAAACATGGTGTGGCTGTCATGACAATACGGGAGCTATTTGACTTCATAGTTGACCCGGCAATTACAGACGAAAATGTTGATAGCTATT

Basic information

species Arabidopsis thaliana
transcript AT2G24990.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G24990.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 3'ss of exon 9
----------------------------------gtaagtgtcctgttttaacaatgcttaatttgactggtataaggtgtctgatgtgtggaatattttgacaatca----cacgcagGATTTTTTCAAAAAACATGGTGTGGCTGTCATGACAATACGGGAGCTATTTGACTTCATAGTTGACCCGGCAATTACAGACGAAAATGTTGATAGCTATT
                                    | || | ||    | | ||   | | | | |||  || || ||| |   | | | |   |||    || |      || |||||||||||| |||||||||||||| ||||| |||||||| || || || ||||| ||||||||||| ||  | ||||| || ||    || |||   ||| 
gtatgttgtttctctgagatttcttggctggtttcaatgttttctacaattaaaacagtgactgtaactatta-aatgtgacaattatattggtcattgaagcatttggtggcatgcagGATTTTTTTAAAAAACATGGTGTAGCTGTTATGACAATTCGAGAACTGTTTGATTTCATAGTTGATCCAACCATTACTGATGAGTCAGTGGATGATTATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttgactggtataaggtgtctgatgtgtggaatattttgacaatcacacgcagGATTTTTTCAAAAAACATGGTGTGGCTGTCATGACAATACGGGAGCTATTTGACTTCATAGTTGACCCGGCAATTACAGACGAAAATGTTGATAGCTATT
                                    ttttgac  putative branch site (score: 3)
                                aatattttgacaat  TA-rich tract