Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagggctgacttctaaagtatctcaaaaatacaaatggtctatgtgactatgtctaaagcttcctctgttttatttgtagTGGCTGAAGTTATTACTCATACCTAAAAAATTCAGAACCGGAGATGAACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTTATACTTTGCACTTT

Basic information

species Arabidopsis thaliana
transcript AT2G23700.1
intron # 9
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatacaaatggtctatgtgactatgtctaaagcttcctctgttttatttgtagTGGCTGAAGTTATTACTCATACCTAAAAAATTCAGAACCGGAGATGAACATCAAGAATATTCCCTCGAGCATTCCGAGCCTCTCTTATACTTTGCACTTT
                          gtctaaa  putative branch site (score: 3)
                                  cttcctctgttttatt  CT-rich tract
                                           ttttatttgta  TA-rich tract