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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaacaatttttctttaatatctttctaaagattttctcttataattacagataagtgatagtagagaatatgatggatttttacagGCGCATCCATATTTCTATCCGATTAGAAATGCAGAGAGCAGCCGTACGCCGCGCAGCCAGTGATCTCGAAAACATTTGCTTGTTCAATCTTCTGATTTTT

Basic information

species Arabidopsis thaliana
transcript AT2G23070.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G23070.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv07s0129g00270.t01 (Vitis vinifera), 3'ss of exon 9
-------gtaagcaacaatttttctttaatatctttctaaagattttctcttataattac--agataagtgatagtagagaatatgatggatttt-tacagGCGCATCCATATTTCTATCCGATTAGAAATGCAGAGAGCAGCCGTACGCCGCGCAGCC---AGTGA-TCTCGAAAAC-ATTTGCTTGTTCAATCTTCTGATTTTT
        ||    |     | | || | ||| ||| |     | |  |    |   | |  ||   |||  | | ||  |  || ||  || |  | ||||| ||||| |||||||| ||||||||||||||||| |||||| | | |||||||| |    ||||| ||||  | || ||      |     |    |  |    
tgtttacatagaataggggctgtgttcattatgtttatttgtttctatttcattggcttccaaggccagttct-gaagtaaccatcatccatgtgatgcagGCCCATCCTTATTTCTACCCGATTAGAAATGCAGAAAGCAGCAGAA-GCCGCGCATCATAGAGTGAATCTCAGATACCATAAAAAAGGATGGTACCTTCTT----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088019|gb|DR383778.1|DR383778
EST:     AGTTGCTGAGATATGATCACCAAGAAAGGCCAACAGCTAAAGAAGCAATG                         GCGCATCCATATTTCTATCCGATTAGAAATGCAGAGAGCAGCCGTACGCCG
genomic: AGTTGCTGAGATATGATCACCAAGAAAGGCCAACAGCTAAAGAAGCAATGgtaagcaaca ... atttttacagGCGCATCCATATTTCTATCCGATTAGAAATGCAGAGAGCAGCCGTACGCCG
EST: gi|47831931|gb|CK121615.1|CK121615
EST:     AGTTGCTGAGATATGATCACCAAGAAAGGCCAACAGCTAAAGAAGCAATG                         GCGCATCCATATTTCTATCCGATTAGAAATGCAGAGAGCAGCCGTACGCCG
genomic: AGTTGCTGAGATATGATCACCAAGAAAGGCCAACAGCTAAAGAAGCAATGgtaagcaaca ... atttttacagGCGCATCCATATTTCTATCCGATTAGAAATGCAGAGAGCAGCCGTACGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctcttataattacagataagtgatagtagagaatatgatggatttttacagGCGCATCCATATTTCTATCCGATTAGAAATGCAGAGAGCAGCCGTACGCCGCGCAGCCAGTGATCTCGAAAACATTTGCTTGTTCAATCTTCTGATTTTT
                                              tttttac  CT-rich tract
       ttataattacagataa  TA-rich tract