Sequence
atgc intronic sequence ATGC exonic sequencegtaatgttttcctcttaccactttttctattcttctgcttacactatgtatcttttttaattgatgatacttgcacttgcctttaaacagGTTATGTATCATACAATTTCGTTATAGGAGCATACTCATATTGGGGACCAAAGGCTGGTTATAACATTTATAAAATG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G22730.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G22730.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv07s0205g00120.t01 (Vitis vinifera), 3'ss of exon 10
-gtaatgttttcctct--taccactttttct-attcttctgcttacactatgtatc------ttttttaattgatgatacttgcacttgcctttaaacagGTTATGTATCATACAATTTCGTTATAGGAGCATACTCATATTGGGGACCAAAGGCTGGTTATAACATTTATAAAATG
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tatagaaatttcaaatggtatggtgttttcttaggttactaatcatatagtaaattgtttggtttttataataatgctactactgtttattgtttggcagGATATGTATCATACAACTTTGTAATAGGAGCTTATTCATACTGGGGGCCAAAGGCTGGTTATAATATTTATCATATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164025978|gb|ES152211.1|ES152211EST: AGACATGAAAGTTCTGTATAAAGAAAAGGTCTTTGTTGTTAATGTCTTAG GTTATGTATCATACAATTTCGTTATAGGAG
genomic: AGACATGAAAGTTCTGTATAAAGAAAAGGTCTTTGTTGTTAATGTCTTAGgtaatgtttt ... ctttaaacagGTTATGTATCATACAATTTCGTTATAGGAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcttacactatgtatcttttttaattgatgatacttgcacttgcctttaaacagGTTATGTATCATACAATTTCGTTATAGGAGCATACTCATATTGGGGACCAAAGGCTGGTTATAACATTTATAAAATG
cttgccttt CT-rich tract
tatgtatcttttttaa TA-rich tract