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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctcttgtcatctctcatacatgtttttttctaaagtattcatgaacctacatgttatgttatgcagGTTCTTTACTCTGCTTCTCTTCTCAAAAACAACAAGACCATCCATGAAGCTCTAATGGCTGCAATGTCCAAAAATGCATCTGTTCTTGAATGCATTCAAA

Basic information

species Arabidopsis thaliana
transcript AT2G21960.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079351|gb|DR375108.1|DR375108
EST:     GCCAACCNAAAATCAGCAACGAGCAGCAGCAAAATCTAACAAGATGGGCT                         GTTCTTTACTCTGCTTCTCTTCTCAAAAACAACAAGACCATCCATGAAGCT
genomic: GCCAACCCAAAATCAGCAACGAGCAGCAGCAAAATCTAACAAGATGGGCTgtaagtttct ... tgttatgcagGTTCTTTACTCTGCTTCTCTTCTCAAAAACAACAAGACCATCCATGAAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcatacatgtttttttctaaagtattcatgaacctacatgttatgttatgcagGTTCTTTACTCTGCTTCTCTTCTCAAAAACAACAAGACCATCCATGAAGCTCTAATGGCTGCAATGTCCAAAAATGCATCTGTTCTTGAATGCATTCAAA
                ttctaaa  putative branch site (score: 2)
           tttttttctaaagtat  TA-rich tract