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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcttcttcatccatcttatctgccatagcctttgttcaatctgtgtaacttcttctggaaattttgctctccttccttgtacgcgaatcatcagATATTGCAGCAAAGCGTGGCTATAAAAATGTCTCAGATCTCACACCAACTGAAATTGCTATCGAG

Basic information

species Arabidopsis thaliana
transcript AT2G21940.4
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86033529|gb|DR329282.1|DR329282
EST:     CTATCGCGGTGAAGCATACACAAACGCAAATGCCAGAGTCTCCTTAGAAA                         ATATTGCAGCAAAGC-TGGCTATAAAAATGTCTCAGATCTCACACCAACTG
genomic: CGAGCGCGGTGAAGCATACACAAACGCAAATGCCAGAGTCTCCTTAGAAAgtatgtcttc ... gaatcatcagATATTGCAGCAAAGCGTGGCTATAAAAATGTCTCAGATCTCACACCAACTG
EST: gi|164153629|gb|ES050912.1|ES050912
EST:     GTCTCCTTAGAAA                         ATATTTCAGCAAAGCGTGGCTATAAAAATGTCTCAGATCTCACACCAACTG
genomic: GTCTCCTTAGAAAgtatgtcttc ... gaatcatcagATATTGCAGCAAAGCGTGGCTATAAAAATGTCTCAGATCTCACACCAACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtgtaacttcttctggaaattttgctctccttccttgtacgcgaatcatcagATATTGCAGCAAAGCGTGGCTATAAAAATGTCTCAGATCTCACACCAACTGAAATTGCTATCGAG
   gtgtaac  putative branch site (score: 3)
                   aaatttt  TA-rich tract