Sequence
atgc intronic sequence ATGC exonic sequencegtatgtcacaaactaattatcacaatgagttaaaattttgccatgatttgaattcaatatctcttttgttttgcagTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATG
Basic information
species | Arabidopsis thaliana |
transcript | AT2G19940.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G19940.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA20G01220.1 (Glycine max), 3'ss of exon 9
-----------------------gtatgtcacaaactaattat--cacaatgagttaaaattttgccatgatttgaattcaatatctcttttgttttgcagTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATG
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ctatttgttatatattgccaatgatttgattttagctattggggacatattggcatctgaatttgaatagatctaattaccttatttttgttgtat-gcagTTCCTGAAATTGAACAGGGACTTGCTGATGCTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACACCTAATTCCAATG
upper sequence: AT2G19940.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA07G29630.1 (Glycine max), 3'ss of exon 10
---------gtatgtcacaaac----taattatcacaatgag-------ttaaaattttgccatgatttgaattcaatatct--cttttgttt--tgcagTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATG
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ctatttgttatatattgctagtgatttgattttagctattggggacatattggcatcttaatttgaatagatctaattatcttatttttgttgtatgcagTTCCTGAAATTGAGCAGGGACTTGCTGATGCTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125102564|gb|EL157278.1|EL157278EST: CTTATGGTGTCACCCGTCATCGCCAT
genomic: CTTATGGTGTCACCCGTCATCGCCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acaatgagttaaaattttgccatgatttgaattcaatatctcttttgttttgcagTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATG
tatctcttttgtttt CT-rich tract
atttgaattcaatat TA-rich tract